RNA–Protein interactions for RNA: ENST00000616271.4

CADM1-222, Transcript of cell adhesion molecule 1, human

TSL 5 BASIC

Gene CADM1, Length 1,246 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CADM1-222	ENST00000616271	HTRA2	O43464	458 aa	Predicted RBP	18.56	■□□□□ 0.56
CADM1-222	ENST00000616271	TSPAN6	O43657	245 aa		18.56	■□□□□ 0.56
CADM1-222	ENST00000616271	PCDH8	O95206	1070 aa		18.56	■□□□□ 0.56
CADM1-222	ENST00000616271	SERPINF2	P08697	491 aa		18.56	■□□□□ 0.56
CADM1-222	ENST00000616271	TIMP2	P16035	220 aa		18.56	■□□□□ 0.56
CADM1-222	ENST00000616271	XPA	P23025	273 aa	Predicted RBP	18.56	■□□□□ 0.56
CADM1-222	ENST00000616271	ITK	Q08881	620 aa		18.56	■□□□□ 0.56
CADM1-222	ENST00000616271	ELP6	Q0PNE2	266 aa		18.56	■□□□□ 0.56
CADM1-222	ENST00000616271	ZBTB17	Q13105	803 aa		18.56	■□□□□ 0.56
CADM1-222	ENST00000616271	ZNF211	Q13398	564 aa	Predicted RBP	18.56	■□□□□ 0.56
CADM1-222	ENST00000616271	XRCC4	Q13426	336 aa		18.56	■□□□□ 0.56
CADM1-222	ENST00000616271	SF3A2	Q15428	464 aa	Known RBP	18.56	■□□□□ 0.56
CADM1-222	ENST00000616271	SETMAR	Q53H47	684 aa	Predicted RBP	18.56	■□□□□ 0.56
CADM1-222	ENST00000616271	TTC7B	Q86TV6	843 aa		18.56	■□□□□ 0.56
CADM1-222	ENST00000616271	PRPF39	Q86UA1	669 aa	Known RBP	18.56	■□□□□ 0.56
CADM1-222	ENST00000616271	SPOCK2	Q92563	424 aa		18.56	■□□□□ 0.56
CADM1-222	ENST00000616271	QKI	Q96PU8	341 aa	Known RBP eCLIP	18.56	■□□□□ 0.56	4e-6	■■■□□ 18.8
CADM1-222	ENST00000616271	SEMA3C	Q99985	751 aa		18.56	■□□□□ 0.56
CADM1-222	ENST00000616271	SLC6A14	Q9UN76	642 aa		18.56	■□□□□ 0.56
CADM1-222	ENST00000616271	DMTF1	Q9Y222	760 aa		18.56	■□□□□ 0.56
CADM1-222	ENST00000616271	TTLL3	Q9Y4R7	772 aa		18.56	■□□□□ 0.56
CADM1-222	ENST00000616271	PTPRZ1	P23471	2315 aa	Predicted RBP	18.56	■□□□□ 0.56
CADM1-222	ENST00000616271		A0A1W2PQU0	124 aa		18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	TTC24	A2A3L6	582 aa	Predicted RBP	18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	JCHAIN	P01591	159 aa		18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	CFI	P05156	583 aa		18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	RPS21	P63220	83 aa	Known RBP	18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	OTUD4	Q01804	1114 aa	Known RBP	18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	DSC2	Q02487	901 aa		18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	LMNB2	Q03252	620 aa		18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	RPS6KA1	Q15418	735 aa		18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	UGP2	Q16851	508 aa		18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	TMEM259	Q4ZIN3	620 aa		18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	SEL1L2	Q5TEA6	688 aa		18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	TCEAL6	Q6IPX3	200 aa		18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	ZC3H18	Q86VM9	953 aa	Known RBP	18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	ZSWIM9	Q86XI8	627 aa		18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	KIAA2013	Q8IYS2	634 aa		18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	PAF1	Q8N7H5	531 aa		18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	ACTL9	Q8TC94	416 aa		18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	TCEAL3	Q969E4	200 aa		18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	FEM1C	Q96JP0	617 aa		18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	EBF2	Q9HAK2	575 aa		18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	CAPN10	Q9HC96	672 aa		18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	TM9SF3	Q9HD45	589 aa		18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	SEPT10	Q9P0V9	454 aa		18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	ZFR2	Q9UPR6	939 aa	Known RBP	18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	ITM2B	Q9Y287	266 aa		18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	18.55	■□□□□ 0.56
CADM1-222	ENST00000616271	GOLGA6L9	A6NEM1	432 aa		18.54	■□□□□ 0.56
CADM1-222	ENST00000616271	NEMP1	O14524	444 aa		18.54	■□□□□ 0.56
CADM1-222	ENST00000616271	MAT2A	P31153	395 aa	Known RBP	18.54	■□□□□ 0.56
CADM1-222	ENST00000616271	POLR2L	P62875	67 aa	Known RBP	18.54	■□□□□ 0.56
CADM1-222	ENST00000616271	RACK1	P63244	317 aa	Known RBP	18.54	■□□□□ 0.56
CADM1-222	ENST00000616271	TRAF2	Q12933	501 aa		18.54	■□□□□ 0.56
CADM1-222	ENST00000616271	ZNF284	Q2VY69	593 aa		18.54	■□□□□ 0.56
CADM1-222	ENST00000616271	AASDH	Q4L235	1098 aa	Predicted RBP	18.54	■□□□□ 0.56
CADM1-222	ENST00000616271	SLC45A4	Q5BKX6	768 aa		18.54	■□□□□ 0.56
CADM1-222	ENST00000616271	LRRC73	Q5JTD7	316 aa		18.54	■□□□□ 0.56
CADM1-222	ENST00000616271	NAPEPLD	Q6IQ20	393 aa		18.54	■□□□□ 0.56
CADM1-222	ENST00000616271	ERAP2	Q6P179	960 aa		18.54	■□□□□ 0.56
CADM1-222	ENST00000616271	REXO1L1P	Q8IX06	675 aa		18.54	■□□□□ 0.56
CADM1-222	ENST00000616271	CNTD1	Q8N815	330 aa		18.54	■□□□□ 0.56
CADM1-222	ENST00000616271	TTC13	Q8NBP0	860 aa		18.54	■□□□□ 0.56
CADM1-222	ENST00000616271	ARRDC2	Q8TBH0	407 aa		18.54	■□□□□ 0.56
CADM1-222	ENST00000616271	CARD9	Q9H257	536 aa		18.54	■□□□□ 0.56
CADM1-222	ENST00000616271	GGT7	Q9UJ14	662 aa		18.54	■□□□□ 0.56
CADM1-222	ENST00000616271	PCDHGC4	Q9Y5F7	938 aa		18.54	■□□□□ 0.56
CADM1-222	ENST00000616271	SLCO1B1	Q9Y6L6	691 aa		18.54	■□□□□ 0.56
CADM1-222	ENST00000616271	ZNF292	O60281	2723 aa		18.53	■□□□□ 0.56
CADM1-222	ENST00000616271	LNP1	A1A4G5	178 aa		18.53	■□□□□ 0.56
CADM1-222	ENST00000616271	CP	P00450	1065 aa		18.53	■□□□□ 0.56
CADM1-222	ENST00000616271	CA4	P22748	312 aa		18.53	■□□□□ 0.56
CADM1-222	ENST00000616271	PTPN3	P26045	913 aa		18.53	■□□□□ 0.56
CADM1-222	ENST00000616271	GRIA4	P48058	902 aa		18.53	■□□□□ 0.56
CADM1-222	ENST00000616271	AFF3	P51826	1226 aa	Known RBP	18.53	■□□□□ 0.56
CADM1-222	ENST00000616271	IRX4	P78413	519 aa		18.53	■□□□□ 0.56
CADM1-222	ENST00000616271	KLF1	Q13351	362 aa	Predicted RBP	18.53	■□□□□ 0.56
CADM1-222	ENST00000616271	TEAD4	Q15561	434 aa		18.53	■□□□□ 0.56
CADM1-222	ENST00000616271	TMEM52B	Q4KMG9	183 aa		18.53	■□□□□ 0.56
CADM1-222	ENST00000616271	TEX44	Q53QW1	395 aa		18.53	■□□□□ 0.56
CADM1-222	ENST00000616271	SEL1L3	Q68CR1	1132 aa		18.53	■□□□□ 0.56
CADM1-222	ENST00000616271	B4GALNT4	Q76KP1	1039 aa		18.53	■□□□□ 0.56
CADM1-222	ENST00000616271	SERAC1	Q96JX3	654 aa		18.53	■□□□□ 0.56
CADM1-222	ENST00000616271	SLC6A18	Q96N87	628 aa		18.53	■□□□□ 0.56
CADM1-222	ENST00000616271	VAT1	Q99536	393 aa		18.53	■□□□□ 0.56
CADM1-222	ENST00000616271	CEP41	Q9BYV8	373 aa		18.53	■□□□□ 0.56
CADM1-222	ENST00000616271	PCDH12	Q9NPG4	1184 aa		18.53	■□□□□ 0.56
CADM1-222	ENST00000616271		H7C0C1	242 aa		18.52	■□□□□ 0.56
CADM1-222	ENST00000616271	RIOK3	O14730	519 aa	Known RBP	18.52	■□□□□ 0.56
CADM1-222	ENST00000616271	ZNF189	O75820	626 aa	Predicted RBP	18.52	■□□□□ 0.56
CADM1-222	ENST00000616271	PGLS	O95336	258 aa		18.52	■□□□□ 0.56
CADM1-222	ENST00000616271	NFKBIA	P25963	317 aa		18.52	■□□□□ 0.56
CADM1-222	ENST00000616271	MMP12	P39900	470 aa		18.52	■□□□□ 0.56
CADM1-222	ENST00000616271	ATP5O	P48047	213 aa		18.52	■□□□□ 0.56
CADM1-222	ENST00000616271	EIF3E	P60228	445 aa	Known RBP	18.52	■□□□□ 0.56
CADM1-222	ENST00000616271	NIPAL4	Q0D2K0	466 aa		18.52	■□□□□ 0.56
CADM1-222	ENST00000616271	ARMC12	Q5T9G4	340 aa		18.52	■□□□□ 0.56
CADM1-222	ENST00000616271	CDKL3	Q8IVW4	592 aa	Predicted RBP	18.52	■□□□□ 0.56
CADM1-222	ENST00000616271	CXorf40A	Q8TE69	158 aa		18.52	■□□□□ 0.56

Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms