RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 HIC2Q96JB3 615 aa19.19■□□□□ 0.66
CDX1-202ENST00000616154 PDLIM2Q96JY6 352 aa19.19■□□□□ 0.66
CDX1-202ENST00000616154 GDAP1L1Q96MZ0 367 aa19.19■□□□□ 0.66
CDX1-202ENST00000616154 FZD10Q9ULW2 581 aa19.19■□□□□ 0.66
CDX1-202ENST00000616154 CAPN11Q9UMQ6 739 aa19.19■□□□□ 0.66
CDX1-202ENST00000616154 BZW2Q9Y6E2 419 aaKnown RBP19.19■□□□□ 0.66
CDX1-202ENST00000616154 MGAQ8IWI9 3026 aa19.18■□□□□ 0.66
CDX1-202ENST00000616154 TMEM191CA6NGB0 347 aa19.18■□□□□ 0.66
CDX1-202ENST00000616154 WASH4PA8MWX3 477 aa19.18■□□□□ 0.66
CDX1-202ENST00000616154 USP12O75317 370 aa19.18■□□□□ 0.66
CDX1-202ENST00000616154 TMCC1O94876 653 aa19.18■□□□□ 0.66
CDX1-202ENST00000616154 FTLP02792 175 aaPredicted RBP19.18■□□□□ 0.66
CDX1-202ENST00000616154 MPOP05164 745 aa19.18■□□□□ 0.66
CDX1-202ENST00000616154 HTR7P34969 479 aa19.18■□□□□ 0.66
CDX1-202ENST00000616154 ZBED6P86452 979 aa19.18■□□□□ 0.66
CDX1-202ENST00000616154 PTK2BQ14289 1009 aa19.18■□□□□ 0.66
CDX1-202ENST00000616154 EFHC2Q5JST6 749 aa19.18■□□□□ 0.66
CDX1-202ENST00000616154 ATXN7L2Q5T6C5 722 aaPredicted RBP19.18■□□□□ 0.66
CDX1-202ENST00000616154 GPR155Q7Z3F1 870 aa19.18■□□□□ 0.66
CDX1-202ENST00000616154 RTL3Q8N8U3 475 aaKnown RBP19.18■□□□□ 0.66
CDX1-202ENST00000616154 LMX1AQ8TE12 382 aa19.18■□□□□ 0.66
CDX1-202ENST00000616154 SLC39A7Q92504 469 aa19.18■□□□□ 0.66
CDX1-202ENST00000616154 TBATAQ96M53 351 aa19.18■□□□□ 0.66
CDX1-202ENST00000616154 LGMNQ99538 433 aa19.18■□□□□ 0.66
CDX1-202ENST00000616154 NOL6Q9H6R4 1146 aaKnown RBP19.18■□□□□ 0.66
CDX1-202ENST00000616154 POLR1BQ9H9Y6 1135 aa19.18■□□□□ 0.66
CDX1-202ENST00000616154 SPASTQ9UBP0 616 aa19.18■□□□□ 0.66
CDX1-202ENST00000616154 TEX51A0A1B0GUA7 166 aa19.17■□□□□ 0.66
CDX1-202ENST00000616154 EIF3CLB5ME19 914 aaKnown RBP19.17■□□□□ 0.66
CDX1-202ENST00000616154 BUB1O43683 1085 aa19.17■□□□□ 0.66
CDX1-202ENST00000616154 MYBL1P10243 752 aa19.17■□□□□ 0.66
CDX1-202ENST00000616154 IGFALSP35858 605 aa19.17■□□□□ 0.66
CDX1-202ENST00000616154 THOP1P52888 689 aa19.17■□□□□ 0.66
CDX1-202ENST00000616154 ERVPABLB-1P60509 514 aa19.17■□□□□ 0.66
CDX1-202ENST00000616154 YPEL5P62699 121 aa19.17■□□□□ 0.66
CDX1-202ENST00000616154 CDKN3Q16667 212 aa19.17■□□□□ 0.66
CDX1-202ENST00000616154 ISXQ2M1V0 245 aa19.17■□□□□ 0.66
CDX1-202ENST00000616154 DEFB133Q30KQ1 61 aa19.17■□□□□ 0.66
CDX1-202ENST00000616154 INO80DQ53TQ3 878 aaPredicted RBP19.17■□□□□ 0.66
CDX1-202ENST00000616154 GUSBP11Q6P575 273 aa19.17■□□□□ 0.66
CDX1-202ENST00000616154 EFL1Q7Z2Z2 1120 aaKnown RBP19.17■□□□□ 0.66
CDX1-202ENST00000616154 TTC7BQ86TV6 843 aa19.17■□□□□ 0.66
CDX1-202ENST00000616154 ARFGAP1Q8N6T3 406 aa19.17■□□□□ 0.66
CDX1-202ENST00000616154 TRIM11Q96F44 468 aa19.17■□□□□ 0.66
CDX1-202ENST00000616154 EIF3CQ99613 913 aaKnown RBP19.17■□□□□ 0.66
CDX1-202ENST00000616154 IL12RB2Q99665 862 aa19.17■□□□□ 0.66
CDX1-202ENST00000616154 C1QTNF7Q9BXJ2 289 aa19.17■□□□□ 0.66
CDX1-202ENST00000616154 DKK3Q9UBP4 350 aa19.17■□□□□ 0.66
CDX1-202ENST00000616154 MFHAS1Q9Y4C4 1052 aa19.17■□□□□ 0.66
CDX1-202ENST00000616154 KIF26BQ2KJY2 2108 aa19.16■□□□□ 0.66
CDX1-202ENST00000616154 CFAP46Q8IYW2 2715 aa19.16■□□□□ 0.66
CDX1-202ENST00000616154 EME2A4GXA9 379 aaPredicted RBP19.16■□□□□ 0.66
CDX1-202ENST00000616154 TMCO5BA8MYB1 307 aa19.16■□□□□ 0.66
CDX1-202ENST00000616154 TOR1BO14657 336 aa19.16■□□□□ 0.66
CDX1-202ENST00000616154 TM7SF2O76062 418 aa19.16■□□□□ 0.66
CDX1-202ENST00000616154 IGSF6O95976 241 aa19.16■□□□□ 0.66
CDX1-202ENST00000616154 GYPCP04921 128 aa19.16■□□□□ 0.66
CDX1-202ENST00000616154 SKILP12757 684 aa19.16■□□□□ 0.66
CDX1-202ENST00000616154 DESP17661 470 aa19.16■□□□□ 0.66
CDX1-202ENST00000616154 TGM2P21980 687 aa19.16■□□□□ 0.66
CDX1-202ENST00000616154 RAD51Q06609 339 aa19.16■□□□□ 0.66
CDX1-202ENST00000616154 TRIM14Q14142 442 aa19.16■□□□□ 0.66
CDX1-202ENST00000616154 NR0B2Q15466 257 aa19.16■□□□□ 0.66
CDX1-202ENST00000616154 LRRC73Q5JTD7 316 aa19.16■□□□□ 0.66
CDX1-202ENST00000616154 IGF2-ASQ6U949 168 aa19.16■□□□□ 0.66
CDX1-202ENST00000616154 VPS36Q86VN1 386 aa19.16■□□□□ 0.66
CDX1-202ENST00000616154 ZNF354CQ86Y25 554 aa19.16■□□□□ 0.66
CDX1-202ENST00000616154 RBFAQ8N0V3 343 aa19.16■□□□□ 0.66
CDX1-202ENST00000616154 PYROXD2Q8N2H3 581 aa19.16■□□□□ 0.66
CDX1-202ENST00000616154 TPCN2Q8NHX9 752 aa19.16■□□□□ 0.66
CDX1-202ENST00000616154 CXorf40AQ8TE69 158 aa19.16■□□□□ 0.66
CDX1-202ENST00000616154 GRAMD1AQ96CP6 724 aa19.16■□□□□ 0.66
CDX1-202ENST00000616154 BOCQ9BWV1 1114 aa19.16■□□□□ 0.66
CDX1-202ENST00000616154 TCEAL2Q9H3H9 227 aaPredicted RBP19.16■□□□□ 0.66
CDX1-202ENST00000616154 APOBEC3BQ9UH17 382 aaKnown RBP19.16■□□□□ 0.66
CDX1-202ENST00000616154 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.16■□□□□ 0.66
CDX1-202ENST00000616154 SCINQ9Y6U3 715 aa19.16■□□□□ 0.66
CDX1-202ENST00000616154 LRP4O75096 1905 aa19.15■□□□□ 0.66
CDX1-202ENST00000616154 CPED1A4D0V7 1026 aa19.15■□□□□ 0.66
CDX1-202ENST00000616154 LMO7DNF2Z398 122 aa19.15■□□□□ 0.66
CDX1-202ENST00000616154 ATMINO43313 823 aaPredicted RBP19.15■□□□□ 0.66
CDX1-202ENST00000616154 MMP20O60882 483 aa19.15■□□□□ 0.66
CDX1-202ENST00000616154 PRB1P04280 392 aa19.15■□□□□ 0.66
CDX1-202ENST00000616154 SERPING1P05155 500 aa19.15■□□□□ 0.66
CDX1-202ENST00000616154 EPHB2P29323 1055 aa19.15■□□□□ 0.66
CDX1-202ENST00000616154 HNRNPH3P31942 346 aaKnown RBP19.15■□□□□ 0.66
CDX1-202ENST00000616154 YBEYP58557 167 aaPredicted RBP19.15■□□□□ 0.66
CDX1-202ENST00000616154 RHOAP61586 193 aa19.15■□□□□ 0.66
CDX1-202ENST00000616154 C19orf57Q0VDD7 668 aa19.15■□□□□ 0.66
CDX1-202ENST00000616154 MACC1Q6ZN28 852 aa19.15■□□□□ 0.66
CDX1-202ENST00000616154 CYP4V2Q6ZWL3 525 aaPredicted RBP19.15■□□□□ 0.66
CDX1-202ENST00000616154 PSTKQ8IV42 348 aaKnown RBP19.15■□□□□ 0.66
CDX1-202ENST00000616154 PHACTR4Q8IZ21 702 aa19.15■□□□□ 0.66
CDX1-202ENST00000616154 TP53I13Q8NBR0 393 aaPredicted RBP19.15■□□□□ 0.66
CDX1-202ENST00000616154 GLMNQ92990 594 aa19.15■□□□□ 0.66
CDX1-202ENST00000616154 EPAS1Q99814 870 aa19.15■□□□□ 0.66
CDX1-202ENST00000616154 LRRC61Q9BV99 259 aa19.15■□□□□ 0.66
CDX1-202ENST00000616154 KLC2Q9H0B6 622 aa19.15■□□□□ 0.66
CDX1-202ENST00000616154 ASCL3Q9NQ33 180 aa19.15■□□□□ 0.66
CDX1-202ENST00000616154 CNOT8Q9UFF9 292 aaKnown RBP19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms