RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 YY2O15391 372 aa17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 LZTS3O60299 673 aaPredicted RBP17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 CELA2BP08218 269 aaPredicted RBP17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 CTSEP14091 401 aa17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 TSHRP16473 764 aa17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 FERP16591 822 aa17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 PSMA2P25787 234 aa17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 RBMS1P29558 406 aaKnown RBP17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 RPIAP49247 311 aa17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 GSCP56915 257 aaPredicted RBP17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 OGDHQ02218 1023 aa17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 TLE3Q04726 772 aa17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 LRRC14Q15048 493 aa17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 ISXQ2M1V0 245 aa17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 PARP15Q460N3 678 aa17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 ENPP7Q6UWV6 458 aa17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 GPR155Q7Z3F1 870 aa17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 SLC35F3Q8IY50 421 aa17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 AOPEPQ8N6M6 819 aa17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 TP53I13Q8NBR0 393 aaPredicted RBP17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 ZNF248Q8NDW4 579 aa17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 ZNF578Q96N58 590 aaPredicted RBP17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 SUV39H2Q9H5I1 410 aa17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 PCDH12Q9NPG4 1184 aa17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 NCKIPSDQ9NZQ3 722 aa17.76■□□□□ 0.43
SHKBP1-223ENST00000600552 AGRPO00253 132 aa17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 EEF2KO00418 725 aaKnown RBP17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 KLK10O43240 276 aa17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 PCCBP05166 539 aa17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 CCDC172P0C7W6 258 aa17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 LSSP48449 732 aa17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 PAPOLAP51003 745 aaKnown RBP17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 YPEL5P62699 121 aa17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 ELP6Q0PNE2 266 aa17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 CA9Q16790 459 aa17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 TMEM52BQ4KMG9 183 aa17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 BROXQ5VW32 411 aa17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 ESRP1Q6NXG1 681 aaKnown RBP17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 MACC1Q6ZN28 852 aa17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 RBM44Q6ZP01 1051 aaKnown RBP17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 NYAP1Q6ZVC0 841 aa17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 CAMK1DQ8IU85 385 aa17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 LSMEM2Q8N112 164 aa17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 KCNE4Q8WWG9 221 aa17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 GBP4Q96PP9 640 aa17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 ERGIC2Q96RQ1 377 aa17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 CLPBQ9H078 707 aa17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 CPNE5Q9HCH3 593 aa17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 DKK3Q9UBP4 350 aa17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 PADI4Q9UM07 663 aa17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 AP4E1Q9UPM8 1137 aa17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 LRRK1Q38SD2 2015 aa17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 KIF26BQ2KJY2 2108 aa17.75■□□□□ 0.43
SHKBP1-223ENST00000600552 TCRBV5S1A1TA0A578 114 aa17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 EME2A4GXA9 379 aaPredicted RBP17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 A8MX80 341 aa17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 DFFAO00273 331 aa17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 TPP1O14773 563 aa17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 FGF10O15520 208 aaPredicted RBP17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 TEX33O43247 280 aa17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 BUB1BO60566 1050 aaPredicted RBP17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 ATP1A3P13637 1013 aa17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 C6P13671 934 aa17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 LIG3P49916 1009 aa17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 INPP5AQ14642 412 aa17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 WSCD2Q2TBF2 565 aa17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 PPP6R3Q5H9R7 873 aaPredicted RBP17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 PPP1R15BQ5SWA1 713 aa17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 ARHGAP40Q5TG30 622 aa17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 ERAP2Q6P179 960 aa17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 RBM43Q6ZSC3 357 aaKnown RBP17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 UMODL1-AS1Q8N2C9 162 aa17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 VCPIP1Q96JH7 1222 aa17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 CCDC3Q9BQI4 270 aa17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 BOCQ9BWV1 1114 aa17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 CPEB1Q9BZB8 566 aaKnown RBP17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 SLC39A8Q9C0K1 460 aa17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 MFHAS1Q9Y4C4 1052 aa17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 OR1A2Q9Y585 309 aa17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 LOC400499M0QZD8 3231 aa17.74■□□□□ 0.43
SHKBP1-223ENST00000600552 PMS2P1A4D2B8 440 aa17.73■□□□□ 0.43
SHKBP1-223ENST00000600552 ARHGAP42A6NI28 874 aa17.73■□□□□ 0.43
SHKBP1-223ENST00000600552 WASH4PA8MWX3 477 aa17.73■□□□□ 0.43
SHKBP1-223ENST00000600552 LMO7DNF2Z398 122 aa17.73■□□□□ 0.43
SHKBP1-223ENST00000600552 PALMO75781 387 aa17.73■□□□□ 0.43
SHKBP1-223ENST00000600552 ZIC2O95409 532 aaPredicted RBP17.73■□□□□ 0.43
SHKBP1-223ENST00000600552 C19orf57Q0VDD7 668 aa17.73■□□□□ 0.43
SHKBP1-223ENST00000600552 UGP2Q16851 508 aa17.73■□□□□ 0.43
SHKBP1-223ENST00000600552 C6orf132Q5T0Z8 1188 aa17.73■□□□□ 0.43
SHKBP1-223ENST00000600552 SRLQ86TD4 932 aa17.73■□□□□ 0.43
SHKBP1-223ENST00000600552 TPCN2Q8NHX9 752 aa17.73■□□□□ 0.43
SHKBP1-223ENST00000600552 SCG3Q8WXD2 468 aaKnown RBP17.73■□□□□ 0.43
SHKBP1-223ENST00000600552 APOOQ9BUR5 198 aa17.73■□□□□ 0.43
SHKBP1-223ENST00000600552 LRRC19Q9H756 370 aa17.73■□□□□ 0.43
SHKBP1-223ENST00000600552 SP110Q9HB58 689 aa17.73■□□□□ 0.43
SHKBP1-223ENST00000600552 THSD1Q9NS62 852 aa17.73■□□□□ 0.43
SHKBP1-223ENST00000600552 GPR34Q9UPC5 381 aa17.73■□□□□ 0.43
SHKBP1-223ENST00000600552 ENTPD2Q9Y5L3 495 aa17.73■□□□□ 0.43
SHKBP1-223ENST00000600552 GOLGA6L22H0YM25 854 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms