RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 PCDH12Q9NPG4 1184 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 MBNL1Q9NR56 388 aaKnown RBP12.27□□□□□ -0.45
LIG1-217ENST00000599165 DONSONQ9NYP3 566 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 FREM2Q5SZK8 3169 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 ACACAQ13085 2346 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 CELSR3Q9NYQ7 3312 aa12.27□□□□□ -0.45
LIG1-217ENST00000599165 LY6G6EA0A0G2JKS1 128 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 SPTY2D1-AS1A0A0U1RR47 76 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 GOLGA8CPA6NN73 597 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 A6NNZ2 444 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 MYO1FO00160 1098 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 RIOK3O14730 519 aaKnown RBP12.26□□□□□ -0.45
LIG1-217ENST00000599165 MFSD11O43934 449 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 MAGEC1O60732 1142 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 PALMO75781 387 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 PIAS2O75928 621 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 TPM3P06753 285 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 ITGAVP06756 1048 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 TMEM253P0C7T8 217 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 DGKAP23743 735 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 MMP12P39900 470 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 ARL4AP40617 200 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 ACADVLP49748 655 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 CDH6P55285 790 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 CLDN6P56747 220 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 NSUN2Q08J23 767 aaKnown RBP eCLIP12.26□□□□□ -0.45
LIG1-217ENST00000599165 EIF2B5Q13144 721 aaKnown RBP12.26□□□□□ -0.45
LIG1-217ENST00000599165 LBRQ14739 615 aaKnown RBP12.26□□□□□ -0.45
LIG1-217ENST00000599165 ST3GAL2Q16842 350 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 PROX2Q3B8N5 592 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 ZNF542PQ5EBM4 170 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 TMCO4Q5TGY1 634 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 NCBP2-AS2Q69YL0 99 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 TMCO3Q6UWJ1 677 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 CCNI2Q6ZMN8 369 aaPredicted RBP12.26□□□□□ -0.45
LIG1-217ENST00000599165 TMPRSS7Q7RTY8 843 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 ZSCAN30Q86W11 494 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 LZTR1Q8N653 840 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 PQLC3Q8N755 202 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 KDF1Q8NAX2 398 aaPredicted RBP12.26□□□□□ -0.45
LIG1-217ENST00000599165 DENND6BQ8NEG7 585 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 HCAR2Q8TDS4 363 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 FAF2Q96CS3 445 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 ZNF641Q96N77 438 aaPredicted RBP12.26□□□□□ -0.45
LIG1-217ENST00000599165 TUBGCP5Q96RT8 1024 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 WRAP53Q9BUR4 548 aaKnown RBP12.26□□□□□ -0.45
LIG1-217ENST00000599165 CALN1Q9BXU9 219 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 CTTNBP2NLQ9P2B4 639 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 RCOR3Q9P2K3 495 aaPredicted RBP12.26□□□□□ -0.45
LIG1-217ENST00000599165 UVRAGQ9P2Y5 699 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 FTSJ1Q9UET6 329 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 APOBEC2Q9Y235 224 aaKnown RBP12.26□□□□□ -0.45
LIG1-217ENST00000599165 COQ6Q9Y2Z9 468 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 U3KQA8 63 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 RP1P56715 2156 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 ZZEF1O43149 2961 aa12.26□□□□□ -0.45
LIG1-217ENST00000599165 ZFHX4Q86UP3 3567 aa12.25□□□□□ -0.45
LIG1-217ENST00000599165 ENC1O14682 589 aa12.25□□□□□ -0.45
LIG1-217ENST00000599165 SIGLEC6O43699 453 aa12.25□□□□□ -0.45
LIG1-217ENST00000599165 KRT37O76014 449 aa12.25□□□□□ -0.45
LIG1-217ENST00000599165 MTA2O94776 668 aa12.25□□□□□ -0.45
LIG1-217ENST00000599165 H2AFZP0C0S5 128 aa12.25□□□□□ -0.45
LIG1-217ENST00000599165 RAD51Q06609 339 aa12.25□□□□□ -0.45
LIG1-217ENST00000599165 RFTN1Q14699 578 aaPredicted RBP12.25□□□□□ -0.45
LIG1-217ENST00000599165 PAFAH1B3Q15102 231 aaKnown RBP12.25□□□□□ -0.45
LIG1-217ENST00000599165 SMAD1Q15797 465 aaKnown RBP12.25□□□□□ -0.45
LIG1-217ENST00000599165 WSCD2Q2TBF2 565 aa12.25□□□□□ -0.45
LIG1-217ENST00000599165 KCTD16Q68DU8 428 aa12.25□□□□□ -0.45
LIG1-217ENST00000599165 DHRS13Q6UX07 377 aa12.25□□□□□ -0.45
LIG1-217ENST00000599165 H2AFVQ71UI9 128 aa12.25□□□□□ -0.45
LIG1-217ENST00000599165 PTAR1Q7Z6K3 402 aaPredicted RBP12.25□□□□□ -0.45
LIG1-217ENST00000599165 TC2NQ8N9U0 490 aa12.25□□□□□ -0.45
LIG1-217ENST00000599165 CTNNBL1Q8WYA6 563 aaPredicted RBP12.25□□□□□ -0.45
LIG1-217ENST00000599165 SPOCK2Q92563 424 aa12.25□□□□□ -0.45
LIG1-217ENST00000599165 RAPGEF5Q92565 580 aa12.25□□□□□ -0.45
LIG1-217ENST00000599165 CNDP2Q96KP4 475 aaKnown RBP12.25□□□□□ -0.45
LIG1-217ENST00000599165 ZNF599Q96NL3 588 aa12.25□□□□□ -0.45
LIG1-217ENST00000599165 MGME1Q9BQP7 344 aa12.25□□□□□ -0.45
LIG1-217ENST00000599165 CINPQ9BW66 212 aaPredicted RBP12.25□□□□□ -0.45
LIG1-217ENST00000599165 TCEAL2Q9H3H9 227 aaPredicted RBP12.25□□□□□ -0.45
LIG1-217ENST00000599165 NHEJ1Q9H9Q4 299 aaPredicted RBP12.25□□□□□ -0.45
LIG1-217ENST00000599165 ATP8A1Q9Y2Q0 1164 aa12.25□□□□□ -0.45
LIG1-217ENST00000599165 DMXL2Q8TDJ6 3036 aa12.25□□□□□ -0.45
LIG1-217ENST00000599165 ANKRD11Q6UB99 2663 aaPredicted RBP12.24□□□□□ -0.45
LIG1-217ENST00000599165 C3orf70A6NLC5 250 aaPredicted RBP12.24□□□□□ -0.45
LIG1-217ENST00000599165 TAF4O00268 1085 aa12.24□□□□□ -0.45
LIG1-217ENST00000599165 NEMP1O14524 444 aa12.24□□□□□ -0.45
LIG1-217ENST00000599165 HTRA2O43464 458 aaPredicted RBP12.24□□□□□ -0.45
LIG1-217ENST00000599165 TM7SF2O76062 418 aa12.24□□□□□ -0.45
LIG1-217ENST00000599165 MAP3K6O95382 1288 aa12.24□□□□□ -0.45
LIG1-217ENST00000599165 LDOC1O95751 146 aaPredicted RBP12.24□□□□□ -0.45
LIG1-217ENST00000599165 CSF2P04141 144 aa12.24□□□□□ -0.45
LIG1-217ENST00000599165 C6P13671 934 aa12.24□□□□□ -0.45
LIG1-217ENST00000599165 NME1P15531 152 aaKnown RBP12.24□□□□□ -0.45
LIG1-217ENST00000599165 MAN1A1P33908 653 aa12.24□□□□□ -0.45
LIG1-217ENST00000599165 GJC1P36383 396 aa12.24□□□□□ -0.45
LIG1-217ENST00000599165 RABIFP47224 123 aa12.24□□□□□ -0.45
LIG1-217ENST00000599165 MAXP61244 160 aa12.24□□□□□ -0.45
LIG1-217ENST00000599165 GALNT2Q10471 571 aa12.24□□□□□ -0.45
LIG1-217ENST00000599165 SLC10A2Q12908 348 aaPredicted RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms