RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	WSCD2	Q2TBF2	565 aa		10.64	□□□□□ -0.71
LSM4-205	ENST00000597776	PARP15	Q460N3	678 aa		10.64	□□□□□ -0.71
LSM4-205	ENST00000597776	INO80D	Q53TQ3	878 aa	Predicted RBP	10.64	□□□□□ -0.71
LSM4-205	ENST00000597776	PPP1R15B	Q5SWA1	713 aa		10.64	□□□□□ -0.71
LSM4-205	ENST00000597776	C6orf132	Q5T0Z8	1188 aa		10.64	□□□□□ -0.71
LSM4-205	ENST00000597776	FOXR1	Q6PIV2	292 aa		10.64	□□□□□ -0.71
LSM4-205	ENST00000597776	RBM44	Q6ZP01	1051 aa	Known RBP	10.64	□□□□□ -0.71
LSM4-205	ENST00000597776	LSMEM2	Q8N112	164 aa		10.64	□□□□□ -0.71
LSM4-205	ENST00000597776	KCNE4	Q8WWG9	221 aa		10.64	□□□□□ -0.71
LSM4-205	ENST00000597776	CASKIN2	Q8WXE0	1202 aa		10.64	□□□□□ -0.71
LSM4-205	ENST00000597776	TSACC	Q96A04	125 aa	Predicted RBP	10.64	□□□□□ -0.71
LSM4-205	ENST00000597776	AGPAT1	Q99943	283 aa		10.64	□□□□□ -0.71
LSM4-205	ENST00000597776	NCAPG	Q9BPX3	1015 aa		10.64	□□□□□ -0.71
LSM4-205	ENST00000597776	CNPY3	Q9BT09	278 aa		10.64	□□□□□ -0.71
LSM4-205	ENST00000597776	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	10.64	□□□□□ -0.71
LSM4-205	ENST00000597776	PDF	Q9HBH1	243 aa		10.64	□□□□□ -0.71
LSM4-205	ENST00000597776	PCDH12	Q9NPG4	1184 aa		10.64	□□□□□ -0.71
LSM4-205	ENST00000597776	THSD1	Q9NS62	852 aa		10.64	□□□□□ -0.71
LSM4-205	ENST00000597776	SIRPG	Q9P1W8	387 aa		10.64	□□□□□ -0.71
LSM4-205	ENST00000597776	DKK3	Q9UBP4	350 aa		10.64	□□□□□ -0.71
LSM4-205	ENST00000597776	MFHAS1	Q9Y4C4	1052 aa		10.64	□□□□□ -0.71
LSM4-205	ENST00000597776	TEX51	A0A1B0GUA7	166 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	ANKRD62	A6NC57	917 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	WASH4P	A8MWX3	477 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776		J3KR12	359 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	TK2	O00142	265 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	C6	P13671	934 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	XPA	P23025	273 aa	Predicted RBP	10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	RGR	P47804	291 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	RPIA	P49247	311 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	PDX1	P52945	283 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	TMPRSS3	P57727	454 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	TPI1	P60174	286 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	PPARD	Q03181	441 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	UBXN1	Q04323	297 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	LRRC14	Q15048	493 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	ALG11	Q2TAA5	492 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	TMEM52B	Q4KMG9	183 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	ARHGAP40	Q5TG30	622 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	BROX	Q5VW32	411 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	KCTD16	Q68DU8	428 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	ZSWIM9	Q86XI8	627 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	HID1	Q8IV36	788 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	UMODL1-AS1	Q8N2C9	162 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	ZNF843	Q8N446	348 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	KY	Q8NBH2	561 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	PCDH19	Q8TAB3	1148 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	NAT6	Q93015	286 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	PRR11	Q96HE9	360 aa	Predicted RBP	10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	CELF6	Q96J87	481 aa	Known RBP	10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	TBATA	Q96M53	351 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	CCDC3	Q9BQI4	270 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	LRRC19	Q9H756	370 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	CATSPERB	Q9H7T0	1116 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	TAS2R14	Q9NYV8	317 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	GULP1	Q9UBP9	304 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	UBA2	Q9UBT2	640 aa	Predicted RBP	10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	LIMA1	Q9UHB6	759 aa	Known RBP	10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	RABGEF1	Q9UJ41	708 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	DAAM1	Q9Y4D1	1078 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	OR1A2	Q9Y585	309 aa		10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	HELZ2	Q9BYK8	2649 aa	Known RBP	10.63	□□□□□ -0.71
LSM4-205	ENST00000597776	TSPAN11	A1L157	253 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	FGF10	O15520	208 aa	Predicted RBP	10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	ATMIN	O43313	823 aa	Predicted RBP	10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	BUB1B	O60566	1050 aa	Predicted RBP	10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	PRAMEF11	O60813	436 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	PCCB	P05166	539 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	RBMS1	P29558	406 aa	Known RBP	10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	LIG3	P49916	1009 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	HK3	P52790	923 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	MYL5	Q02045	173 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	ELP6	Q0PNE2	266 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	INPP5A	Q14642	412 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	CA9	Q16790	459 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	UGP2	Q16851	508 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	CFAP58	Q5T655	872 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	DCUN1D2	Q6PH85	259 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	ENPP7	Q6UWV6	458 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	RBM43	Q6ZSC3	357 aa	Known RBP	10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	APTX	Q7Z2E3	356 aa	Known RBP	10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	RD3	Q7Z3Z2	195 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	DNAAF5	Q86Y56	855 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	CAMK1D	Q8IU85	385 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	MCOLN2	Q8IZK6	566 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	TPCN2	Q8NHX9	752 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	GLMN	Q92990	594 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	CCDC74A	Q96AQ1	378 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	SLC46A1	Q96NT5	459 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	ERGIC2	Q96RQ1	377 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	CPEB1	Q9BZB8	566 aa	Known RBP	10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	SUV39H2	Q9H5I1	410 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	PADI4	Q9UM07	663 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	DOLK	Q9UPQ8	538 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	RP1	P56715	2156 aa		10.62	□□□□□ -0.71
LSM4-205	ENST00000597776	TMCO5B	A8MYB1	307 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	RIOK3	O14730	519 aa	Known RBP	10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	TCEA3	O75764	348 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	TNFSF15	O95150	251 aa		10.61	□□□□□ -0.71
LSM4-205	ENST00000597776	RASGRP1	O95267	797 aa		10.61	□□□□□ -0.71

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