RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 C1QTNF2Q9BXJ5 285 aa15.27■□□□□ 0.04
TRIM28-205ENST00000595028 SLC17A9Q9BYT1 436 aa15.27■□□□□ 0.04
TRIM28-205ENST00000595028 KLHL11Q9NVR0 708 aa15.27■□□□□ 0.04
TRIM28-205ENST00000595028 SEPT3Q9UH03 358 aa15.27■□□□□ 0.04
TRIM28-205ENST00000595028 NAV2Q8IVL1 2488 aa15.27■□□□□ 0.03
TRIM28-205ENST00000595028 ACACAQ13085 2346 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 FAM221BA6H8Z2 402 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 A6NNZ2 444 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 MUSKO15146 869 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 MFSD11O43934 449 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 MTA2O94776 668 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 KRT7P08729 469 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 FTH1P19P0C7X4 201 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 IL4RP24394 825 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 RXRGP48443 463 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 SUOXP51687 545 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 CLDN2P57739 230 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 SLC10A7Q0GE19 358 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 MMRN1Q13201 1228 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 LBRQ14739 615 aaKnown RBP15.26■□□□□ 0.03
TRIM28-205ENST00000595028 SRLQ86TD4 932 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 GATAD2AQ86YP4 633 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 CHCHD4Q8N4Q1 142 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 TC2NQ8N9U0 490 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 DENND6BQ8NEG7 585 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 OR13H1Q8NG92 308 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 HCAR2Q8TDS4 363 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 RHBDD1Q8TEB9 315 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 ASB12Q8WXK4 309 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 RFFLQ8WZ73 363 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 ZNF641Q96N77 438 aaPredicted RBP15.26■□□□□ 0.03
TRIM28-205ENST00000595028 PSKH2Q96QS6 385 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 CDC6Q99741 560 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 RBSNQ9H1K0 784 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 SUV39H2Q9H5I1 410 aa15.26■□□□□ 0.03
TRIM28-205ENST00000595028 TENM4Q6N022 2769 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 TDRD6O60522 2096 aaKnown RBP15.25■□□□□ 0.03
TRIM28-205ENST00000595028 IGLON5A6NGN9 336 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 TMEM110-MUSTN1A8MSY1 372 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 RAD51BO15315 384 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 BUB1BO60566 1050 aaPredicted RBP15.25■□□□□ 0.03
TRIM28-205ENST00000595028 TRIM16O95361 564 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 PEX11BO96011 259 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 TIMP2P16035 220 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 XPAP23025 273 aaPredicted RBP15.25■□□□□ 0.03
TRIM28-205ENST00000595028 SERPINA4P29622 427 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 HSPA9P38646 679 aaKnown RBP15.25■□□□□ 0.03
TRIM28-205ENST00000595028 RENBPP51606 427 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 AP1S1P61966 158 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 ELP6Q0PNE2 266 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 ZNF235Q14590 738 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 PDK2Q15119 407 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 ATP13A4Q4VNC1 1196 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 CFAP58Q5T655 872 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 NCBP2-AS2Q69YL0 99 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 BRAT1Q6PJG6 821 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 PTAR1Q7Z6K3 402 aaPredicted RBP15.25■□□□□ 0.03
TRIM28-205ENST00000595028 TTC7BQ86TV6 843 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 ZSWIM9Q86XI8 627 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 CAMK1DQ8IU85 385 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 RHOT2Q8IXI1 618 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 SLC22A18ASQ8N1D0 253 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 SLC35G2Q8TBE7 412 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 FAM174AQ8TBP5 190 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 FAF2Q96CS3 445 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 MRFAP1L1Q96HT8 127 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 KLF6Q99612 283 aaPredicted RBP15.25■□□□□ 0.03
TRIM28-205ENST00000595028 CALN1Q9BXU9 219 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 ATP13A3Q9H7F0 1226 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 GPR27Q9NS67 375 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 INTUQ9ULD6 942 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 HS3ST3A1Q9Y663 406 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 APC2O95996 2303 aa15.25■□□□□ 0.03
TRIM28-205ENST00000595028 EIF4E1BA6NMX2 242 aaKnown RBP15.24■□□□□ 0.03
TRIM28-205ENST00000595028 MAFKO60675 156 aa15.24■□□□□ 0.03
TRIM28-205ENST00000595028 PAK4O96013 591 aaPredicted RBP15.24■□□□□ 0.03
TRIM28-205ENST00000595028 ITGAVP06756 1048 aa15.24■□□□□ 0.03
TRIM28-205ENST00000595028 ZNF75DP51815 510 aa15.24■□□□□ 0.03
TRIM28-205ENST00000595028 NSUN2Q08J23 767 aaKnown RBP eCLIP15.24■□□□□ 0.03
TRIM28-205ENST00000595028 SGCGQ13326 291 aa15.24■□□□□ 0.03
TRIM28-205ENST00000595028 MESDQ14696 234 aa15.24■□□□□ 0.03
TRIM28-205ENST00000595028 PAFAH1B3Q15102 231 aaKnown RBP15.24■□□□□ 0.03
TRIM28-205ENST00000595028 UGP2Q16851 508 aa15.24■□□□□ 0.03
TRIM28-205ENST00000595028 ANKRD20A8PQ5CZ79 823 aa15.24■□□□□ 0.03
TRIM28-205ENST00000595028 MAP7D3Q8IWC1 876 aa15.24■□□□□ 0.03
TRIM28-205ENST00000595028 KCTD6Q8NC69 237 aa15.24■□□□□ 0.03
TRIM28-205ENST00000595028 PCDH19Q8TAB3 1148 aa15.24■□□□□ 0.03
TRIM28-205ENST00000595028 CXorf40AQ8TE69 158 aa15.24■□□□□ 0.03
TRIM28-205ENST00000595028 ECHDC3Q96DC8 303 aa15.24■□□□□ 0.03
TRIM28-205ENST00000595028 BMFQ96LC9 184 aa15.24■□□□□ 0.03
TRIM28-205ENST00000595028 LENG8Q96PV6 779 aaPredicted RBP15.24■□□□□ 0.03
TRIM28-205ENST00000595028 PCDH12Q9NPG4 1184 aa15.24■□□□□ 0.03
TRIM28-205ENST00000595028 TOR4AQ9NXH8 423 aa15.24■□□□□ 0.03
TRIM28-205ENST00000595028 FTSJ1Q9UET6 329 aa15.24■□□□□ 0.03
TRIM28-205ENST00000595028 APOBEC2Q9Y235 224 aaKnown RBP15.24■□□□□ 0.03
TRIM28-205ENST00000595028 GOLGA4Q13439 2230 aaKnown RBP15.23■□□□□ 0.03
TRIM28-205ENST00000595028 POM121BA6NF01 834 aa15.23■□□□□ 0.03
TRIM28-205ENST00000595028 FPGTO14772 594 aa15.23■□□□□ 0.03
TRIM28-205ENST00000595028 MMP20O60882 483 aa15.23■□□□□ 0.03
TRIM28-205ENST00000595028 TM7SF2O76062 418 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms