RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 PROSCO94903 275 aa15.41■□□□□ 0.06
TRIM28-203ENST00000593582 C1SP09871 688 aa15.41■□□□□ 0.06
TRIM28-203ENST00000593582 CDK4P11802 303 aa15.41■□□□□ 0.06
TRIM28-203ENST00000593582 ITIH2P19823 946 aa15.41■□□□□ 0.06
TRIM28-203ENST00000593582 DGKAP23743 735 aa15.41■□□□□ 0.06
TRIM28-203ENST00000593582 GJC1P36383 396 aa15.41■□□□□ 0.06
TRIM28-203ENST00000593582 SCNN1BP51168 640 aa15.41■□□□□ 0.06
TRIM28-203ENST00000593582 ADKP55263 362 aaKnown RBP15.41■□□□□ 0.06
TRIM28-203ENST00000593582 AP1S1P61966 158 aa15.41■□□□□ 0.06
TRIM28-203ENST00000593582 POLR2LP62875 67 aaKnown RBP15.41■□□□□ 0.06
TRIM28-203ENST00000593582 BCL2L1Q07817 233 aa15.41■□□□□ 0.06
TRIM28-203ENST00000593582 SLC10A7Q0GE19 358 aa15.41■□□□□ 0.06
TRIM28-203ENST00000593582 ZNF235Q14590 738 aa15.41■□□□□ 0.06
TRIM28-203ENST00000593582 TMEM52BQ4KMG9 183 aa15.41■□□□□ 0.06
TRIM28-203ENST00000593582 CCNI2Q6ZMN8 369 aaPredicted RBP15.41■□□□□ 0.06
TRIM28-203ENST00000593582 PARGQ86W56 976 aa15.41■□□□□ 0.06
TRIM28-203ENST00000593582 CNGA4Q8IV77 575 aa15.41■□□□□ 0.06
TRIM28-203ENST00000593582 BBS5Q8N3I7 341 aa15.41■□□□□ 0.06
TRIM28-203ENST00000593582 GALNT15Q8N3T1 639 aa15.41■□□□□ 0.06
TRIM28-203ENST00000593582 SLC25A45Q8N413 288 aa15.41■□□□□ 0.06
TRIM28-203ENST00000593582 ATPAF2Q8N5M1 289 aa15.41■□□□□ 0.06
TRIM28-203ENST00000593582 KCTD6Q8NC69 237 aa15.41■□□□□ 0.06
TRIM28-203ENST00000593582 NSMCE1Q8WV22 266 aa15.41■□□□□ 0.06
TRIM28-203ENST00000593582 CENPTQ96BT3 561 aa15.41■□□□□ 0.06
TRIM28-203ENST00000593582 CCDC42Q96M95 316 aa15.41■□□□□ 0.06
TRIM28-203ENST00000593582 TMEM121BQ9BXQ6 578 aaPredicted RBP15.41■□□□□ 0.06
TRIM28-203ENST00000593582 PCDH12Q9NPG4 1184 aa15.41■□□□□ 0.06
TRIM28-203ENST00000593582 PCDHGA1Q9Y5H4 931 aa15.41■□□□□ 0.06
TRIM28-203ENST00000593582 TP53BP1Q12888 1972 aaPredicted RBP15.41■□□□□ 0.06
TRIM28-203ENST00000593582 DOCK9Q9BZ29 2069 aa15.4■□□□□ 0.06
TRIM28-203ENST00000593582 MAP1BP46821 2468 aaKnown RBP15.4■□□□□ 0.06
TRIM28-203ENST00000593582 SPTY2D1-AS1A0A0U1RR47 76 aa15.4■□□□□ 0.06
TRIM28-203ENST00000593582 NEMP2A6NFY4 417 aa15.4■□□□□ 0.06
TRIM28-203ENST00000593582 MUSKO15146 869 aa15.4■□□□□ 0.06
TRIM28-203ENST00000593582 KRT7P08729 469 aa15.4■□□□□ 0.06
TRIM28-203ENST00000593582 TMEM253P0C7T8 217 aa15.4■□□□□ 0.06
TRIM28-203ENST00000593582 IL4RP24394 825 aa15.4■□□□□ 0.06
TRIM28-203ENST00000593582 HSPA9P38646 679 aaKnown RBP15.4■□□□□ 0.06
TRIM28-203ENST00000593582 HNRNPKP61978 463 aaKnown RBP eCLIP15.4■□□□□ 0.06
TRIM28-203ENST00000593582 DNAJC3Q13217 504 aa15.4■□□□□ 0.06
TRIM28-203ENST00000593582 ZNF211Q13398 564 aaPredicted RBP15.4■□□□□ 0.06
TRIM28-203ENST00000593582 PDE1CQ14123 709 aaPredicted RBP15.4■□□□□ 0.06
TRIM28-203ENST00000593582 FZD2Q14332 565 aa15.4■□□□□ 0.06
TRIM28-203ENST00000593582 TMPRSS7Q7RTY8 843 aa15.4■□□□□ 0.06
TRIM28-203ENST00000593582 LRRC49Q8IUZ0 686 aa15.4■□□□□ 0.06
TRIM28-203ENST00000593582 MAP7D3Q8IWC1 876 aa15.4■□□□□ 0.06
TRIM28-203ENST00000593582 KDF1Q8NAX2 398 aaPredicted RBP15.4■□□□□ 0.06
TRIM28-203ENST00000593582 FAM71BQ8TC56 605 aa15.4■□□□□ 0.06
TRIM28-203ENST00000593582 CHP1Q99653 195 aa15.4■□□□□ 0.06
TRIM28-203ENST00000593582 NHEJ1Q9H9Q4 299 aaPredicted RBP15.4■□□□□ 0.06
TRIM28-203ENST00000593582 ATP8A1Q9Y2Q0 1164 aa15.4■□□□□ 0.06
TRIM28-203ENST00000593582 COL5A1P20908 1838 aaPredicted RBP15.39■□□□□ 0.05
TRIM28-203ENST00000593582 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.39■□□□□ 0.05
TRIM28-203ENST00000593582 H3BM21 787 aa15.39■□□□□ 0.05
TRIM28-203ENST00000593582 RIOK3O14730 519 aaKnown RBP15.39■□□□□ 0.05
TRIM28-203ENST00000593582 MAFKO60675 156 aa15.39■□□□□ 0.05
TRIM28-203ENST00000593582 RFPL3O75679 317 aa15.39■□□□□ 0.05
TRIM28-203ENST00000593582 PIAS2O75928 621 aa15.39■□□□□ 0.05
TRIM28-203ENST00000593582 CSF2P04141 144 aa15.39■□□□□ 0.05
TRIM28-203ENST00000593582 CD48P09326 243 aa15.39■□□□□ 0.05
TRIM28-203ENST00000593582 ALPPL2P10696 532 aa15.39■□□□□ 0.05
TRIM28-203ENST00000593582 NME1P15531 152 aaKnown RBP15.39■□□□□ 0.05
TRIM28-203ENST00000593582 CKMT2P17540 419 aa15.39■□□□□ 0.05
TRIM28-203ENST00000593582 MAN1A1P33908 653 aa15.39■□□□□ 0.05
TRIM28-203ENST00000593582 THOP1P52888 689 aa15.39■□□□□ 0.05
TRIM28-203ENST00000593582 PFN3P60673 137 aa15.39■□□□□ 0.05
TRIM28-203ENST00000593582 YPEL5P62699 121 aa15.39■□□□□ 0.05
TRIM28-203ENST00000593582 MMRN1Q13201 1228 aa15.39■□□□□ 0.05
TRIM28-203ENST00000593582 DPYSL3Q14195 570 aa15.39■□□□□ 0.05
TRIM28-203ENST00000593582 PTK2BQ14289 1009 aa15.39■□□□□ 0.05
TRIM28-203ENST00000593582 LRRC14Q15048 493 aa15.39■□□□□ 0.05
TRIM28-203ENST00000593582 PDK2Q15119 407 aa15.39■□□□□ 0.05
TRIM28-203ENST00000593582 SMAD1Q15797 465 aaKnown RBP15.39■□□□□ 0.05
TRIM28-203ENST00000593582 ZNF542PQ5EBM4 170 aa15.39■□□□□ 0.05
TRIM28-203ENST00000593582 ZFYVE27Q5T4F4 411 aa15.39■□□□□ 0.05
TRIM28-203ENST00000593582 DHRS13Q6UX07 377 aa15.39■□□□□ 0.05
TRIM28-203ENST00000593582 ECHDC3Q96DC8 303 aa15.39■□□□□ 0.05
TRIM28-203ENST00000593582 ZNF670Q9BS34 389 aa15.39■□□□□ 0.05
TRIM28-203ENST00000593582 TRIM5Q9C035 493 aa15.39■□□□□ 0.05
TRIM28-203ENST00000593582 UCKL1Q9NWZ5 548 aa15.39■□□□□ 0.05
TRIM28-203ENST00000593582 TMEM110-MUSTN1A8MSY1 372 aa15.38■□□□□ 0.05
TRIM28-203ENST00000593582 AKR1B15C9JRZ8 316 aaPredicted RBP15.38■□□□□ 0.05
TRIM28-203ENST00000593582 TRIM38O00635 465 aa15.38■□□□□ 0.05
TRIM28-203ENST00000593582 TOR1BO14657 336 aa15.38■□□□□ 0.05
TRIM28-203ENST00000593582 FFAR2O15552 330 aa15.38■□□□□ 0.05
TRIM28-203ENST00000593582 SIGLEC6O43699 453 aa15.38■□□□□ 0.05
TRIM28-203ENST00000593582 LZTS3O60299 673 aaPredicted RBP15.38■□□□□ 0.05
TRIM28-203ENST00000593582 PEX11BO96011 259 aa15.38■□□□□ 0.05
TRIM28-203ENST00000593582 C6P13671 934 aa15.38■□□□□ 0.05
TRIM28-203ENST00000593582 IGFALSP35858 605 aa15.38■□□□□ 0.05
TRIM28-203ENST00000593582 MMP12P39900 470 aa15.38■□□□□ 0.05
TRIM28-203ENST00000593582 MMP13P45452 471 aa15.38■□□□□ 0.05
TRIM28-203ENST00000593582 ACADVLP49748 655 aa15.38■□□□□ 0.05
TRIM28-203ENST00000593582 LIG3P49916 1009 aa15.38■□□□□ 0.05
TRIM28-203ENST00000593582 ARSEP51690 589 aa15.38■□□□□ 0.05
TRIM28-203ENST00000593582 ILKQ13418 452 aa15.38■□□□□ 0.05
TRIM28-203ENST00000593582 ATP13A4Q4VNC1 1196 aa15.38■□□□□ 0.05
TRIM28-203ENST00000593582 ANKRD20A8PQ5CZ79 823 aa15.38■□□□□ 0.05
TRIM28-203ENST00000593582 MARC1Q5VT66 337 aa15.38■□□□□ 0.05
TRIM28-203ENST00000593582 SARM1Q6SZW1 724 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms