RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 BFARQ9NZS9 450 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 THAP10Q9P2Z0 257 aaPredicted RBP25.31■■□□□ 1.64
SHMT1-207ENST00000580002 ZC3H7BQ9UGR2 993 aaKnown RBP25.31■■□□□ 1.64
SHMT1-207ENST00000580002 PLAAQ9Y263 795 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 ANKRD36A6QL64 1941 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 FZD6O60353 706 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 NDST3O95803 873 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 CPP00450 1065 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 CHRM1P11229 460 aaPredicted RBP25.31■■□□□ 1.64
SHMT1-207ENST00000580002 TDGQ13569 410 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 C3orf62Q6ZUJ4 267 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 PALM2Q8IXS6 379 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 STAMBPL1Q96FJ0 436 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 PHACTR1Q9C0D0 580 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 VPS37BQ9H9H4 285 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 KCTD3Q9Y597 815 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 SPO11Q9Y5K1 396 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 NFS1Q9Y697 457 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 WASF2Q9Y6W5 498 aa25.31■■□□□ 1.64
SHMT1-207ENST00000580002 TIE1P35590 1138 aa25.3■■□□□ 1.64
SHMT1-207ENST00000580002 KIR2DL1P43626 348 aaPredicted RBP25.3■■□□□ 1.64
SHMT1-207ENST00000580002 NPY2RP49146 381 aa25.3■■□□□ 1.64
SHMT1-207ENST00000580002 VASPP50552 380 aaPredicted RBP25.3■■□□□ 1.64
SHMT1-207ENST00000580002 FAM193AP78312 1265 aa25.3■■□□□ 1.64
SHMT1-207ENST00000580002 SEMG2Q02383 582 aa25.3■■□□□ 1.64
SHMT1-207ENST00000580002 BCL2L1Q07817 233 aa25.3■■□□□ 1.64
SHMT1-207ENST00000580002 POM121L1PQ3SYA9 428 aa25.3■■□□□ 1.64
SHMT1-207ENST00000580002 C9orf64Q5T6V5 341 aa25.3■■□□□ 1.64
SHMT1-207ENST00000580002 STK40Q8N2I9 435 aa25.3■■□□□ 1.64
SHMT1-207ENST00000580002 RMDN1Q96DB5 314 aa25.3■■□□□ 1.64
SHMT1-207ENST00000580002 MUC22E2RYF6 1773 aaPredicted RBP25.3■■□□□ 1.64
SHMT1-207ENST00000580002 MYLKQ15746 1914 aa25.3■■□□□ 1.64
SHMT1-207ENST00000580002 AURKAO14965 403 aa25.29■■□□□ 1.64
SHMT1-207ENST00000580002 BUD23O43709 281 aaKnown RBP25.29■■□□□ 1.64
SHMT1-207ENST00000580002 SIN3BO75182 1162 aa25.29■■□□□ 1.64
SHMT1-207ENST00000580002 POP4O95707 220 aaKnown RBP25.29■■□□□ 1.64
SHMT1-207ENST00000580002 UGT2B4P06133 528 aa25.29■■□□□ 1.64
SHMT1-207ENST00000580002 CTPS1P17812 591 aa25.29■■□□□ 1.64
SHMT1-207ENST00000580002 METAP1P53582 386 aa25.29■■□□□ 1.64
SHMT1-207ENST00000580002 ZP2Q05996 745 aa25.29■■□□□ 1.64
SHMT1-207ENST00000580002 PTPRCAPQ14761 206 aa25.29■■□□□ 1.64
SHMT1-207ENST00000580002 SLC14A2Q15849 920 aa25.29■■□□□ 1.64
SHMT1-207ENST00000580002 QPCTQ16769 361 aa25.29■■□□□ 1.64
SHMT1-207ENST00000580002 PUS10Q3MIT2 529 aaKnown RBP25.29■■□□□ 1.64
SHMT1-207ENST00000580002 ARSIQ5FYB1 569 aa25.29■■□□□ 1.64
SHMT1-207ENST00000580002 PIH1D2Q8WWB5 315 aa25.29■■□□□ 1.64
SHMT1-207ENST00000580002 DNASE1L2Q92874 299 aa25.29■■□□□ 1.64
SHMT1-207ENST00000580002 SLC2A6Q9UGQ3 507 aa25.29■■□□□ 1.64
SHMT1-207ENST00000580002 HTRA2O43464 458 aaPredicted RBP25.28■■□□□ 1.64
SHMT1-207ENST00000580002 PGLSO95336 258 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 EPOP01588 193 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 NMBRP28336 390 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 SLC44A4Q53GD3 710 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 CFAP58Q5T655 872 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 TRMT10BQ6PF06 316 aaKnown RBP25.28■■□□□ 1.64
SHMT1-207ENST00000580002 SERPINA13PQ6UXR4 307 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 RALGPS2Q86X27 583 aaPredicted RBP25.28■■□□□ 1.64
SHMT1-207ENST00000580002 MFSD3Q96ES6 412 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 SARDHQ9UL12 918 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 VCANP13611 3396 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 TCF20Q9UGU0 1960 aaKnown RBP25.28■■□□□ 1.64
SHMT1-207ENST00000580002 AGPSO00116 658 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 LEFTY1O75610 366 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 ALPIP09923 528 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 SRFP11831 508 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 SEPT6Q14141 434 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 EFTUD2Q15029 972 aaKnown RBP eCLIP25.28■■□□□ 1.64
SHMT1-207ENST00000580002 HNRNPA1L2Q32P51 320 aaKnown RBP25.28■■□□□ 1.64
SHMT1-207ENST00000580002 C2orf27AQ580R0 203 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 TMEM196Q5HYL7 178 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 RALGPS1Q5JS13 557 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 LRRC73Q5JTD7 316 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 ADHFE1Q8IWW8 467 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 BLOC1S5Q8TDH9 187 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 UCMAQ8WVF2 138 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 LRRC39Q96DD0 335 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 HEPHQ9BQS7 1158 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 SUV39H2Q9H5I1 410 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 ATP13A3Q9H7F0 1226 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 FAM50BQ9Y247 325 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 STARD13Q9Y3M8 1113 aa25.28■■□□□ 1.64
SHMT1-207ENST00000580002 HLA-DPA1P20036 260 aa25.27■■□□□ 1.64
SHMT1-207ENST00000580002 ABL2P42684 1182 aa25.27■■□□□ 1.64
SHMT1-207ENST00000580002 ARMC12Q5T9G4 340 aa25.27■■□□□ 1.64
SHMT1-207ENST00000580002 ZNF513Q8N8E2 541 aaPredicted RBP25.27■■□□□ 1.64
SHMT1-207ENST00000580002 MDGA1Q8NFP4 955 aa25.27■■□□□ 1.64
SHMT1-207ENST00000580002 FBF1Q8TES7 1133 aa25.27■■□□□ 1.64
SHMT1-207ENST00000580002 KLHL32Q96NJ5 620 aa25.27■■□□□ 1.64
SHMT1-207ENST00000580002 CPEB1Q9BZB8 566 aaKnown RBP25.27■■□□□ 1.64
SHMT1-207ENST00000580002 IL22Q9GZX6 179 aa25.27■■□□□ 1.64
SHMT1-207ENST00000580002 C8orf33Q9H7E9 229 aaPredicted RBP25.27■■□□□ 1.64
SHMT1-207ENST00000580002 POLR3BQ9NW08 1133 aaPredicted RBP25.27■■□□□ 1.64
SHMT1-207ENST00000580002 STON1Q9Y6Q2 735 aa25.27■■□□□ 1.64
SHMT1-207ENST00000580002 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP25.26■■□□□ 1.63
SHMT1-207ENST00000580002 ANKRD66B4E2M5 251 aa25.26■■□□□ 1.63
SHMT1-207ENST00000580002 FGF1P05230 155 aa25.26■■□□□ 1.63
SHMT1-207ENST00000580002 TNFRSF4P43489 277 aa25.26■■□□□ 1.63
SHMT1-207ENST00000580002 RECQLP46063 649 aaPredicted RBP25.26■■□□□ 1.63
SHMT1-207ENST00000580002 CEP128Q6ZU80 1094 aa25.26■■□□□ 1.63
SHMT1-207ENST00000580002 PLPP6Q8IY26 295 aa25.26■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms