RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, human

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG6-213	ENST00000573166	PLEKHG6	Q3KR16	790 aa		10.19	□□□□□ -0.78
SMG6-213	ENST00000573166	GRTP1	Q5TC63	336 aa		10.19	□□□□□ -0.78
SMG6-213	ENST00000573166	MSANTD2	Q6P1R3	559 aa		10.19	□□□□□ -0.78
SMG6-213	ENST00000573166	ACAD11	Q709F0	780 aa		10.19	□□□□□ -0.78
SMG6-213	ENST00000573166	CAMK1D	Q8IU85	385 aa		10.19	□□□□□ -0.78
SMG6-213	ENST00000573166	ARHGAP24	Q8N264	748 aa		10.19	□□□□□ -0.78
SMG6-213	ENST00000573166	EIF1AD	Q8N9N8	165 aa	Known RBP	10.19	□□□□□ -0.78
SMG6-213	ENST00000573166	IGSF8	Q969P0	613 aa		10.19	□□□□□ -0.78
SMG6-213	ENST00000573166	CPNE1	Q99829	537 aa		10.19	□□□□□ -0.78
SMG6-213	ENST00000573166	CENPK	Q9BS16	269 aa		10.19	□□□□□ -0.78
SMG6-213	ENST00000573166	EML4	Q9HC35	981 aa	Known RBP	10.19	□□□□□ -0.78
SMG6-213	ENST00000573166	PPARGC1A	Q9UBK2	798 aa	Known RBP	10.19	□□□□□ -0.78
SMG6-213	ENST00000573166	LIMD1	Q9UGP4	676 aa		10.19	□□□□□ -0.78
SMG6-213	ENST00000573166	CDH7	Q9ULB5	785 aa		10.19	□□□□□ -0.78
SMG6-213	ENST00000573166	APOBEC2	Q9Y235	224 aa	Known RBP	10.19	□□□□□ -0.78
SMG6-213	ENST00000573166	MFHAS1	Q9Y4C4	1052 aa		10.19	□□□□□ -0.78
SMG6-213	ENST00000573166		A0A0D9SEW6	157 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	PYGB	P11216	843 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	CTSE	P14091	401 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	TPSB2	P20231	275 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	CORO7	P57737	925 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	TPSAB1	Q15661	275 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	INSC	Q1MX18	579 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	TBC1D19	Q8N5T2	526 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	ZNF513	Q8N8E2	541 aa	Predicted RBP	10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	DCAF4L2	Q8NA75	395 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	FGF13	Q92913	245 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	MRPL38	Q96DV4	380 aa	Known RBP	10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	SHD	Q96IW2	340 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	WRAP53	Q9BUR4	548 aa	Known RBP	10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	PBX4	Q9BYU1	374 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	SLC7A5P2	Q9GIP4	190 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	FBXO6	Q9NRD1	293 aa	Predicted RBP	10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	TMEM248	Q9NWD8	314 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	FBXO5	Q9UKT4	447 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166		H3BNC9	293 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	INPP4B	O15327	924 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	SUPT7L	O94864	414 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	SLC25A14	O95258	325 aa	Predicted RBP	10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	PTPN7	P35236	360 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	CLNS1A	P54105	237 aa	Known RBP	10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	HSPA14	Q0VDF9	509 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	PTPRN	Q16849	979 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	PIK3R6	Q5UE93	754 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	TRIM68	Q6AZZ1	485 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	AFTPH	Q6ULP2	937 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	BEND5	Q7L4P6	421 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	DET1	Q7L5Y6	550 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	ZNF599	Q96NL3	588 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	LNPEP	Q9UIQ6	1025 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	DNAJC16	Q9Y2G8	782 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	HTR1B	P28222	390 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	TTPA	P49638	278 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	POU4F1	Q01851	419 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	CTBP1	Q13363	440 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	ITGA9	Q13797	1035 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	PAFAH1B3	Q15102	231 aa	Known RBP	10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	PLCL1	Q15111	1095 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	TCEAL1	Q15170	157 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	CARD16	Q5EG05	197 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	LRRC73	Q5JTD7	316 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	COL13A1	Q5TAT6	717 aa	Predicted RBP	10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	SLC9A4	Q6AI14	798 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	LRRC8B	Q6P9F7	803 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	CEP68	Q76N32	757 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	PQLC3	Q8N755	202 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	OR2AP1	Q8NGE2	309 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	STMN2	Q93045	179 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	COPS8	Q99627	209 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	RTP3	Q9BQQ7	232 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	TACO1	Q9BSH4	297 aa	Known RBP	10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	SLC46A2	Q9BY10	475 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	CYP4F12	Q9HCS2	524 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	MARCO	Q9UEW3	520 aa	Predicted RBP	10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	DCDC2	Q9UHG0	476 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	ERVW-1	Q9UQF0	538 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166		A0A096LPK6	155 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	EIF4E1B	A6NMX2	242 aa	Known RBP	10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	MEI4	A8MW99	385 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	NVL	O15381	856 aa	Known RBP	10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	METTL18	O95568	372 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	HLA-DQB2	P05538	268 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	CEBPB	P17676	345 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	MC4R	P32245	332 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	DMC1	Q14565	340 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	VIT	Q6UXI7	678 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	MMAA	Q8IVH4	418 aa	Known RBP	10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	AEN	Q8WTP8	325 aa	Known RBP	10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	HMGB4	Q8WW32	186 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	CACYBP	Q9HB71	228 aa	Known RBP	10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	CHRAC1	Q9NRG0	131 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	RAB23	Q9ULC3	237 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	ARHGAP26	Q9UNA1	814 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	USP3	Q9Y6I4	520 aa		10.18	□□□□□ -0.78
SMG6-213	ENST00000573166	TTC24	A2A3L6	582 aa	Predicted RBP	10.17	□□□□□ -0.78
SMG6-213	ENST00000573166	B4GALT3	O60512	393 aa		10.17	□□□□□ -0.78
SMG6-213	ENST00000573166	DLD	P09622	509 aa	Known RBP	10.17	□□□□□ -0.78
SMG6-213	ENST00000573166	MLN	P12872	115 aa		10.17	□□□□□ -0.78
SMG6-213	ENST00000573166	CHRNA4	P43681	627 aa		10.17	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms