RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 HDAC8Q9BY41 377 aa20.82■□□□□ 0.92
VPS53-210ENST00000571456 KDM4CQ9H3R0 1056 aa20.82■□□□□ 0.92
VPS53-210ENST00000571456 ZDHHC6Q9H6R6 413 aa20.82■□□□□ 0.92
VPS53-210ENST00000571456 SGK2Q9HBY8 427 aa20.82■□□□□ 0.92
VPS53-210ENST00000571456 SAE1Q9UBE0 346 aaPredicted RBP20.82■□□□□ 0.92
VPS53-210ENST00000571456 DKK3Q9UBP4 350 aa20.82■□□□□ 0.92
VPS53-210ENST00000571456 TRHDEQ9UKU6 1024 aa20.82■□□□□ 0.92
VPS53-210ENST00000571456 SNX12Q9UMY4 172 aa20.82■□□□□ 0.92
VPS53-210ENST00000571456 ANKRD36A6QL64 1941 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 CTAGE9A4FU28 777 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 FAM221BA6H8Z2 402 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 PATE3B3GLJ2 98 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 H7C0C1 242 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 CEP104O60308 925 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 SOCS5O75159 536 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 LEFTY1O75610 366 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 RBP3P10745 1247 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 CA4P22748 312 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 NFKBIAP25963 317 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 ATP5OP48047 213 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 PSMD8P48556 350 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 SLC14A2Q15849 920 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 MAP7D1Q3KQU3 841 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 TEX44Q53QW1 395 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 ARSIQ5FYB1 569 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 AADACL2Q6P093 401 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 ZC3H18Q86VM9 953 aaKnown RBP20.81■□□□□ 0.92
VPS53-210ENST00000571456 ZSCAN30Q86W11 494 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 RAB7BQ96AH8 199 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 PPP1R2P1Q96PQ5 205 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 OMDQ99983 421 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 HERPUD2Q9BSE4 406 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 FBXL12Q9NXK8 326 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 ATP8A1Q9Y2Q0 1164 aa20.81■□□□□ 0.92
VPS53-210ENST00000571456 SPAARA0A1B0GVQ0 90 aa20.8■□□□□ 0.92
VPS53-210ENST00000571456 EIF4E1BA6NMX2 242 aaKnown RBP20.8■□□□□ 0.92
VPS53-210ENST00000571456 KPNA3O00505 521 aaPredicted RBP20.8■□□□□ 0.92
VPS53-210ENST00000571456 INSIG1O15503 277 aa20.8■□□□□ 0.92
VPS53-210ENST00000571456 FGGP02679 453 aa20.8■□□□□ 0.92
VPS53-210ENST00000571456 ATP1A1P05023 1023 aaKnown RBP20.8■□□□□ 0.92
VPS53-210ENST00000571456 CD6P30203 668 aa20.8■□□□□ 0.92
VPS53-210ENST00000571456 ETF1P62495 437 aaKnown RBP20.8■□□□□ 0.92
VPS53-210ENST00000571456 SIM1P81133 766 aaPredicted RBP20.8■□□□□ 0.92
VPS53-210ENST00000571456 ZNF805Q5CZA5 627 aa20.8■□□□□ 0.92
VPS53-210ENST00000571456 ATXN7L2Q5T6C5 722 aaPredicted RBP20.8■□□□□ 0.92
VPS53-210ENST00000571456 PAPD7Q5XG87 772 aaKnown RBP20.8■□□□□ 0.92
VPS53-210ENST00000571456 PMS2CLQ68D20 193 aa20.8■□□□□ 0.92
VPS53-210ENST00000571456 DRICH1Q6PGQ1 229 aaPredicted RBP20.8■□□□□ 0.92
VPS53-210ENST00000571456 BRAT1Q6PJG6 821 aa20.8■□□□□ 0.92
VPS53-210ENST00000571456 GDPD4Q6W3E5 623 aa20.8■□□□□ 0.92
VPS53-210ENST00000571456 CYP2U1Q7Z449 544 aa20.8■□□□□ 0.92
VPS53-210ENST00000571456 CHST14Q8NCH0 376 aa20.8■□□□□ 0.92
VPS53-210ENST00000571456 OSBPL9Q96SU4 736 aa20.8■□□□□ 0.92
VPS53-210ENST00000571456 TPSD1Q9BZJ3 242 aa20.8■□□□□ 0.92
VPS53-210ENST00000571456 BTBD1Q9H0C5 482 aa20.8■□□□□ 0.92
VPS53-210ENST00000571456 NT5MQ9NPB1 228 aa20.8■□□□□ 0.92
VPS53-210ENST00000571456 SCUBE2Q9NQ36 999 aa20.8■□□□□ 0.92
VPS53-210ENST00000571456 EVLQ9UI08 416 aaPredicted RBP20.8■□□□□ 0.92
VPS53-210ENST00000571456 KIF2AO00139 706 aaPredicted RBP20.79■□□□□ 0.92
VPS53-210ENST00000571456 KCNK1O00180 336 aa20.79■□□□□ 0.92
VPS53-210ENST00000571456 MID1O15344 667 aa20.79■□□□□ 0.92
VPS53-210ENST00000571456 TRIM16O95361 564 aa20.79■□□□□ 0.92
VPS53-210ENST00000571456 JCHAINP01591 159 aa20.79■□□□□ 0.92
VPS53-210ENST00000571456 CTSLP07711 333 aa20.79■□□□□ 0.92
VPS53-210ENST00000571456 STIP1P31948 543 aaKnown RBP20.79■□□□□ 0.92
VPS53-210ENST00000571456 SCNN1BP51168 640 aa20.79■□□□□ 0.92
VPS53-210ENST00000571456 POLR2LP62875 67 aaKnown RBP20.79■□□□□ 0.92
VPS53-210ENST00000571456 BCL2L1Q07817 233 aa20.79■□□□□ 0.92
VPS53-210ENST00000571456 CCNG2Q16589 344 aa20.79■□□□□ 0.92
VPS53-210ENST00000571456 LONRF2Q1L5Z9 754 aa20.79■□□□□ 0.92
VPS53-210ENST00000571456 DARS2Q6PI48 645 aaKnown RBP20.79■□□□□ 0.92
VPS53-210ENST00000571456 NCEH1Q6PIU2 408 aa20.79■□□□□ 0.92
VPS53-210ENST00000571456 SLC35B2Q8TB61 432 aa20.79■□□□□ 0.92
VPS53-210ENST00000571456 GRIN3AQ8TCU5 1115 aa20.79■□□□□ 0.92
VPS53-210ENST00000571456 ACTRT1Q8TDG2 376 aa20.79■□□□□ 0.92
VPS53-210ENST00000571456 TEKT5Q96M29 485 aa20.79■□□□□ 0.92
VPS53-210ENST00000571456 BBC3Q96PG8 261 aaPredicted RBP20.79■□□□□ 0.92
VPS53-210ENST00000571456 SUV39H2Q9H5I1 410 aa20.79■□□□□ 0.92
VPS53-210ENST00000571456 WSB2Q9NYS7 404 aaPredicted RBP20.79■□□□□ 0.92
VPS53-210ENST00000571456 RNF14Q9UBS8 474 aa20.79■□□□□ 0.92
VPS53-210ENST00000571456 URB1O60287 2271 aaKnown RBP20.79■□□□□ 0.92
VPS53-210ENST00000571456 KALRNO60229 2985 aa20.79■□□□□ 0.92
VPS53-210ENST00000571456 IGHV1OR15-9A0A0B4J2B8 117 aa20.78■□□□□ 0.92
VPS53-210ENST00000571456 TSPAN11A1L157 253 aa20.78■□□□□ 0.92
VPS53-210ENST00000571456 PGRMC1O00264 195 aaKnown RBP20.78■□□□□ 0.92
VPS53-210ENST00000571456 SERPINF2P08697 491 aa20.78■□□□□ 0.92
VPS53-210ENST00000571456 DPP6P42658 865 aa20.78■□□□□ 0.92
VPS53-210ENST00000571456 NEK3P51956 506 aa20.78■□□□□ 0.92
VPS53-210ENST00000571456 CFAP58Q5T655 872 aa20.78■□□□□ 0.92
VPS53-210ENST00000571456 ITPRIPL1Q6GPH6 555 aa20.78■□□□□ 0.92
VPS53-210ENST00000571456 NEK5Q6P3R8 708 aa20.78■□□□□ 0.92
VPS53-210ENST00000571456 ERN2Q76MJ5 926 aaKnown RBP20.78■□□□□ 0.92
VPS53-210ENST00000571456 HDDC3Q8N4P3 179 aa20.78■□□□□ 0.92
VPS53-210ENST00000571456 CADM4Q8NFZ8 388 aa20.78■□□□□ 0.92
VPS53-210ENST00000571456 GANCQ8TET4 914 aa20.78■□□□□ 0.92
VPS53-210ENST00000571456 EXOC2Q96KP1 924 aa20.78■□□□□ 0.92
VPS53-210ENST00000571456 SARDHQ9UL12 918 aa20.78■□□□□ 0.92
VPS53-210ENST00000571456 SAR1BQ9Y6B6 198 aa20.78■□□□□ 0.92
VPS53-210ENST00000571456 LRRC72A6NJI9 287 aa20.77■□□□□ 0.92
VPS53-210ENST00000571456 MUSKO15146 869 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms