RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 POLD3Q15054 466 aaPredicted RBP11.21□□□□□ -0.61
VPS53-207ENST00000570510 ALG11Q2TAA5 492 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 KLHL40Q2TBA0 621 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 CBWD6Q4V339 395 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 C14orf28Q4W4Y0 310 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 CBWD3Q5JTY5 395 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 CBWD5Q5RIA9 395 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 CAPRIN2Q6IMN6 1127 aaKnown RBP11.21□□□□□ -0.61
VPS53-207ENST00000570510 ASB18Q6ZVZ8 466 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 MAMDC2Q7Z304 686 aaPredicted RBP11.21□□□□□ -0.61
VPS53-207ENST00000570510 TMPRSS9Q7Z410 1059 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 TFAP2DQ7Z6R9 452 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 GPR156Q8NFN8 814 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 OR6K2Q8NGY2 324 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 KIAA1524Q8TCG1 905 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 SMARCE1Q969G3 411 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 MOCOSQ96EN8 888 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 NT5C1BQ96P26 610 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 WRAP53Q9BUR4 548 aaKnown RBP11.21□□□□□ -0.61
VPS53-207ENST00000570510 GDPD2Q9HCC8 539 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 ATP13A1Q9HD20 1204 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 MBNL1Q9NR56 388 aaKnown RBP11.21□□□□□ -0.61
VPS53-207ENST00000570510 PCDHB3Q9Y5E6 796 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 PCDHGA3Q9Y5H0 932 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 B3GALT1Q9Y5Z6 326 aa11.21□□□□□ -0.61
VPS53-207ENST00000570510 CACNA1DQ01668 2161 aa11.21□□□□□ -0.62
VPS53-207ENST00000570510 E5RJQ4 531 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 MED7O43513 233 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 DUX1O43812 170 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 DDAH2O95865 285 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 CALCAP01258 141 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 IGLV3-25P01717 112 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 UGT2B4P06133 528 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 FGF3P11487 239 aaPredicted RBP11.2□□□□□ -0.62
VPS53-207ENST00000570510 COL8A1P27658 744 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 MAP4P27816 1152 aaKnown RBP11.2□□□□□ -0.62
VPS53-207ENST00000570510 MAN1A1P33908 653 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 ABL2P42684 1182 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 GPD2P43304 727 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 SERPINH1P50454 418 aaKnown RBP11.2□□□□□ -0.62
VPS53-207ENST00000570510 PITX1P78337 314 aaPredicted RBP11.2□□□□□ -0.62
VPS53-207ENST00000570510 FKBP3Q00688 224 aaKnown RBP11.2□□□□□ -0.62
VPS53-207ENST00000570510 C1QBPQ07021 282 aaKnown RBP11.2□□□□□ -0.62
VPS53-207ENST00000570510 CETN1Q12798 172 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 ARHGAP44Q17R89 818 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 ZCWPW2Q504Y3 356 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 NLGN4XQ8N0W4 816 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 DEFB106AQ8N104 65 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 NLGN4YQ8NFZ3 816 aaPredicted RBP11.2□□□□□ -0.62
VPS53-207ENST00000570510 OR7D4Q8NG98 312 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 CPT1CQ8TCG5 803 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 DHTKD1Q96HY7 919 aaPredicted RBP11.2□□□□□ -0.62
VPS53-207ENST00000570510 CCDC74BQ96LY2 380 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 DDA1Q9BW61 102 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 WDCPQ9H6R7 721 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 CASS4Q9NQ75 786 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 MOSPD1Q9UJG1 213 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 FCF1Q9Y324 198 aaKnown RBP11.2□□□□□ -0.62
VPS53-207ENST00000570510 COQ4Q9Y3A0 265 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 KCTD3Q9Y597 815 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 UNC13CQ8NB66 2214 aa11.2□□□□□ -0.62
VPS53-207ENST00000570510 RNF225M0QZC1 329 aaPredicted RBP11.19□□□□□ -0.62
VPS53-207ENST00000570510 PSMA7O14818 248 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 PMM2O15305 246 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 SLC16A3O15427 465 aaKnown RBP11.19□□□□□ -0.62
VPS53-207ENST00000570510 SEMA7AO75326 666 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 GRAP2O75791 330 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 PRKCGP05129 697 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 KRT5P13647 590 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 NR1D1P20393 614 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 DCTP40126 519 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 OR1D5P58170 312 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 RAB15P59190 212 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 SNRPD1P62314 119 aaKnown RBP11.19□□□□□ -0.62
VPS53-207ENST00000570510 RAD51Q06609 339 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 TRA2AQ13595 282 aaKnown RBP eCLIP11.19□□□□□ -0.62
VPS53-207ENST00000570510 INPP5AQ14642 412 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 NAA30Q147X3 362 aaPredicted RBP11.19□□□□□ -0.62
VPS53-207ENST00000570510 NFATC4Q14934 902 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 IRF4Q15306 451 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 ALFQ53S48 1182 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 CT47A1Q5JQC4 288 aaPredicted RBP11.19□□□□□ -0.62
VPS53-207ENST00000570510 LRRC73Q5JTD7 316 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 EFHC1Q5JVL4 640 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 TCTN3Q6NUS6 607 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 CCDC13Q8IYE1 715 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 UNC5BQ8IZJ1 945 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 STK32AQ8WU08 396 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 STARD8Q92502 1023 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 WDR92Q96MX6 357 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 KLHL32Q96NJ5 620 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 RBM15Q96T37 977 aaKnown RBP eCLIP11.19□□□□□ -0.62
VPS53-207ENST00000570510 TSG101Q99816 390 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 ZSWIM1Q9BR11 485 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 APOOQ9BUR5 198 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 OSBPL1AQ9BXW6 950 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 MAP10Q9P2G4 905 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 DAAM1Q9Y4D1 1078 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 OR1A2Q9Y585 309 aa11.19□□□□□ -0.62
VPS53-207ENST00000570510 ITPR2Q14571 2701 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms