RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 ASNSD1Q9NWL6 643 aa16.36■□□□□ 0.21
CLK3-223ENST00000568488 HPSEQ9Y251 543 aa16.36■□□□□ 0.21
CLK3-223ENST00000568488 OR1A2Q9Y585 309 aa16.36■□□□□ 0.21
CLK3-223ENST00000568488 B3GALT1Q9Y5Z6 326 aa16.36■□□□□ 0.21
CLK3-223ENST00000568488 A1L4Q6 167 aa16.35■□□□□ 0.21
CLK3-223ENST00000568488 CAPN5O15484 640 aaPredicted RBP16.35■□□□□ 0.21
CLK3-223ENST00000568488 VPS4BO75351 444 aa16.35■□□□□ 0.21
CLK3-223ENST00000568488 ZSCAN22P10073 491 aaPredicted RBP16.35■□□□□ 0.21
CLK3-223ENST00000568488 PRCPP42785 496 aa16.35■□□□□ 0.21
CLK3-223ENST00000568488 UQCRFS1P47985 274 aa16.35■□□□□ 0.21
CLK3-223ENST00000568488 B4GALNT1Q00973 533 aa16.35■□□□□ 0.21
CLK3-223ENST00000568488 INPP5AQ14642 412 aa16.35■□□□□ 0.21
CLK3-223ENST00000568488 POLD3Q15054 466 aaPredicted RBP16.35■□□□□ 0.21
CLK3-223ENST00000568488 ARHGAP44Q17R89 818 aa16.35■□□□□ 0.21
CLK3-223ENST00000568488 ATL3Q6DD88 541 aa16.35■□□□□ 0.21
CLK3-223ENST00000568488 GDPD4Q6W3E5 623 aa16.35■□□□□ 0.21
CLK3-223ENST00000568488 ZNF783Q6ZMS7 281 aa16.35■□□□□ 0.21
CLK3-223ENST00000568488 FAM183BPQ6ZVS7 135 aa16.35■□□□□ 0.21
CLK3-223ENST00000568488 DRC7Q8IY82 874 aa16.35■□□□□ 0.21
CLK3-223ENST00000568488 CCDC112Q8NEF3 446 aa16.35■□□□□ 0.21
CLK3-223ENST00000568488 ART4Q93070 314 aa16.35■□□□□ 0.21
CLK3-223ENST00000568488 KREMEN1Q96MU8 473 aa16.35■□□□□ 0.21
CLK3-223ENST00000568488 WDR92Q96MX6 357 aa16.35■□□□□ 0.21
CLK3-223ENST00000568488 NUDT22Q9BRQ3 303 aa16.35■□□□□ 0.21
CLK3-223ENST00000568488 ACP6Q9NPH0 428 aa16.35■□□□□ 0.21
CLK3-223ENST00000568488 ARHGEF38Q9NXL2 777 aa16.35■□□□□ 0.21
CLK3-223ENST00000568488 VPS4AQ9UN37 437 aa16.35■□□□□ 0.21
CLK3-223ENST00000568488 PCDHGA3Q9Y5H0 932 aa16.35■□□□□ 0.21
CLK3-223ENST00000568488 CACNA1DQ01668 2161 aa16.35■□□□□ 0.21
CLK3-223ENST00000568488 ITPR2Q14571 2701 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 I6L893 689 aaPredicted RBP16.34■□□□□ 0.21
CLK3-223ENST00000568488 NUDT21O43809 227 aaKnown RBP16.34■□□□□ 0.21
CLK3-223ENST00000568488 POP4O95707 220 aaKnown RBP16.34■□□□□ 0.21
CLK3-223ENST00000568488 F13A1P00488 732 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 NR1D1P20393 614 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 GNA15P30679 374 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 NDUFA8P51970 172 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 RNASE9P60153 205 aaKnown RBP16.34■□□□□ 0.21
CLK3-223ENST00000568488 SNRPD1P62314 119 aaKnown RBP16.34■□□□□ 0.21
CLK3-223ENST00000568488 GCNT1Q02742 428 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 GNA12Q03113 381 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 CDC20Q12834 499 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 HLTFQ14527 1009 aaKnown RBP eCLIP16.34■□□□□ 0.21
CLK3-223ENST00000568488 WSCD2Q2TBF2 565 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 MYLK3Q32MK0 819 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 BRMS1LQ5PSV4 323 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 KCTD16Q68DU8 428 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 LEKR1Q6ZMV7 388 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 C11orf57Q6ZUT1 292 aaPredicted RBP16.34■□□□□ 0.21
CLK3-223ENST00000568488 IRF2BP1Q8IU81 584 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 PLPP6Q8IY26 295 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 OR2AP1Q8NGE2 309 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 LMO3Q8TAP4 145 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 SSC4DQ8WTU2 575 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 KIAA1143Q96AT1 154 aaPredicted RBP16.34■□□□□ 0.21
CLK3-223ENST00000568488 ISG20Q96AZ6 181 aaKnown RBP16.34■□□□□ 0.21
CLK3-223ENST00000568488 PDXPQ96GD0 296 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 SLC45A3Q96JT2 553 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 CCDC74BQ96LY2 380 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 CPXM1Q96SM3 734 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 OSBPL1AQ9BXW6 950 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 GPN2Q9H9Y4 310 aaPredicted RBP16.34■□□□□ 0.21
CLK3-223ENST00000568488 SLC39A1Q9NY26 324 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 TP53TG5Q9Y2B4 290 aa16.34■□□□□ 0.21
CLK3-223ENST00000568488 SPENQ96T58 3664 aaKnown RBP16.34■□□□□ 0.21
CLK3-223ENST00000568488 IGHV5-10-1A0A0J9YXX1 117 aa16.33■□□□□ 0.2
CLK3-223ENST00000568488 RHPN2P1A8MT19 583 aa16.33■□□□□ 0.2
CLK3-223ENST00000568488 HGSO14964 777 aaPredicted RBP16.33■□□□□ 0.2
CLK3-223ENST00000568488 DAB1O75553 588 aa16.33■□□□□ 0.2
CLK3-223ENST00000568488 CD160O95971 181 aa16.33■□□□□ 0.2
CLK3-223ENST00000568488 PCCBP05166 539 aa16.33■□□□□ 0.2
CLK3-223ENST00000568488 GNLYP22749 145 aa16.33■□□□□ 0.2
CLK3-223ENST00000568488 XPAP23025 273 aaPredicted RBP16.33■□□□□ 0.2
CLK3-223ENST00000568488 CSTF2P33240 577 aaKnown RBP eCLIP16.33■□□□□ 0.2
CLK3-223ENST00000568488 ACVRL1P37023 503 aa16.33■□□□□ 0.2
CLK3-223ENST00000568488 CXCR3P49682 368 aa16.33■□□□□ 0.2
CLK3-223ENST00000568488 SULT1E1P49888 294 aa16.33■□□□□ 0.2
CLK3-223ENST00000568488 PMS1P54277 932 aaKnown RBP16.33■□□□□ 0.2
CLK3-223ENST00000568488 DEUP1Q05D60 604 aa16.33■□□□□ 0.2
CLK3-223ENST00000568488 MEA1Q16626 185 aa16.33■□□□□ 0.2
CLK3-223ENST00000568488 ATXN7L2Q5T6C5 722 aaPredicted RBP16.33■□□□□ 0.2
CLK3-223ENST00000568488 ERICH6BQ5W0A0 696 aa16.33■□□□□ 0.2
CLK3-223ENST00000568488 SPECC1LQ69YQ0 1117 aa16.33■□□□□ 0.2
CLK3-223ENST00000568488 C16orf46Q6P387 395 aa16.33■□□□□ 0.2
CLK3-223ENST00000568488 KRBA2Q6ZNG9 492 aa16.33■□□□□ 0.2
CLK3-223ENST00000568488 PASD1Q8IV76 773 aa16.33■□□□□ 0.2
CLK3-223ENST00000568488 NRSN1Q8IZ57 195 aa16.33■□□□□ 0.2
CLK3-223ENST00000568488 EHBP1Q8NDI1 1231 aa16.33■□□□□ 0.2
CLK3-223ENST00000568488 HAPLN3Q96S86 360 aa16.33■□□□□ 0.2
CLK3-223ENST00000568488 MRPL40Q9NQ50 206 aaKnown RBP16.33■□□□□ 0.2
CLK3-223ENST00000568488 MOSPD1Q9UJG1 213 aa16.33■□□□□ 0.2
CLK3-223ENST00000568488 IGLV3-10A0A075B6K4 115 aa16.32■□□□□ 0.2
CLK3-223ENST00000568488 TRIM49BA6NDI0 452 aa16.32■□□□□ 0.2
CLK3-223ENST00000568488 EFCAB7A8K855 629 aa16.32■□□□□ 0.2
CLK3-223ENST00000568488 GSRP00390 522 aa16.32■□□□□ 0.2
CLK3-223ENST00000568488 TIMP2P16035 220 aa16.32■□□□□ 0.2
CLK3-223ENST00000568488 TFE3P19532 575 aaPredicted RBP16.32■□□□□ 0.2
CLK3-223ENST00000568488 MPSTP25325 297 aa16.32■□□□□ 0.2
CLK3-223ENST00000568488 OAS2P29728 719 aaKnown RBP16.32■□□□□ 0.2
CLK3-223ENST00000568488 MAZP56270 477 aaKnown RBP16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms