RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 TTC7BQ86TV6 843 aa19.73■□□□□ 0.75
CLN3-225ENST00000566824 C1orf216Q8TAB5 229 aa19.73■□□□□ 0.75
CLN3-225ENST00000566824 SNX19Q92543 992 aa19.73■□□□□ 0.75
CLN3-225ENST00000566824 TCEAL3Q969E4 200 aa19.73■□□□□ 0.75
CLN3-225ENST00000566824 NCDNQ9UBB6 729 aa19.73■□□□□ 0.75
CLN3-225ENST00000566824 A0A1W2PQU0 124 aa19.72■□□□□ 0.75
CLN3-225ENST00000566824 HACD1B0YJ81 288 aa19.72■□□□□ 0.75
CLN3-225ENST00000566824 AREL1O15033 823 aa19.72■□□□□ 0.75
CLN3-225ENST00000566824 HTRA2O43464 458 aaPredicted RBP19.72■□□□□ 0.75
CLN3-225ENST00000566824 PDHA1P08559 390 aa19.72■□□□□ 0.75
CLN3-225ENST00000566824 MPLP40238 635 aa19.72■□□□□ 0.75
CLN3-225ENST00000566824 SKOR1P84550 965 aa19.72■□□□□ 0.75
CLN3-225ENST00000566824 PLA2G2CQ5R387 149 aa19.72■□□□□ 0.75
CLN3-225ENST00000566824 PRPF39Q86UA1 669 aaKnown RBP19.72■□□□□ 0.75
CLN3-225ENST00000566824 ALYREFQ86V81 257 aaKnown RBP19.72■□□□□ 0.75
CLN3-225ENST00000566824 ZNF567Q8N184 647 aa19.72■□□□□ 0.75
CLN3-225ENST00000566824 HTR3CQ8WXA8 447 aa19.72■□□□□ 0.75
CLN3-225ENST00000566824 DNASE2BQ8WZ79 361 aa19.72■□□□□ 0.75
CLN3-225ENST00000566824 RUBCNQ92622 972 aa19.72■□□□□ 0.75
CLN3-225ENST00000566824 FOXJ1Q92949 421 aa19.72■□□□□ 0.75
CLN3-225ENST00000566824 TEKT5Q96M29 485 aa19.72■□□□□ 0.75
CLN3-225ENST00000566824 WDR24Q96S15 920 aa19.72■□□□□ 0.75
CLN3-225ENST00000566824 PCED1AQ9H1Q7 454 aa19.72■□□□□ 0.75
CLN3-225ENST00000566824 USP29Q9HBJ7 922 aa19.72■□□□□ 0.75
CLN3-225ENST00000566824 PCDH12Q9NPG4 1184 aa19.72■□□□□ 0.75
CLN3-225ENST00000566824 FSCN3Q9NQT6 498 aa19.72■□□□□ 0.75
CLN3-225ENST00000566824 AMACRQ9UHK6 382 aa19.72■□□□□ 0.75
CLN3-225ENST00000566824 GMEB2Q9UKD1 530 aa19.72■□□□□ 0.75
CLN3-225ENST00000566824 JRKLQ9Y4A0 524 aa19.72■□□□□ 0.75
CLN3-225ENST00000566824 RAI2Q9Y5P3 530 aa19.72■□□□□ 0.75
CLN3-225ENST00000566824 KNL1Q8NG31 2342 aa19.71■□□□□ 0.75
CLN3-225ENST00000566824 PTPRZ1P23471 2315 aaPredicted RBP19.71■□□□□ 0.75
CLN3-225ENST00000566824 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP19.71■□□□□ 0.75
CLN3-225ENST00000566824 UPK3BL1B0FP48 263 aa19.71■□□□□ 0.75
CLN3-225ENST00000566824 UPK3BL2E5RIL1 263 aa19.71■□□□□ 0.75
CLN3-225ENST00000566824 FANCGO15287 622 aa19.71■□□□□ 0.75
CLN3-225ENST00000566824 KIF5CO60282 957 aa19.71■□□□□ 0.75
CLN3-225ENST00000566824 CEP104O60308 925 aa19.71■□□□□ 0.75
CLN3-225ENST00000566824 NEBLO76041 1014 aa19.71■□□□□ 0.75
CLN3-225ENST00000566824 CD86P42081 329 aa19.71■□□□□ 0.75
CLN3-225ENST00000566824 MAPK8P45983 427 aa19.71■□□□□ 0.75
CLN3-225ENST00000566824 CCR5P51681 352 aa19.71■□□□□ 0.75
CLN3-225ENST00000566824 FGL2Q14314 439 aa19.71■□□□□ 0.75
CLN3-225ENST00000566824 GRM3Q14832 879 aa19.71■□□□□ 0.75
CLN3-225ENST00000566824 SF3A2Q15428 464 aaKnown RBP19.71■□□□□ 0.75
CLN3-225ENST00000566824 UGP2Q16851 508 aa19.71■□□□□ 0.75
CLN3-225ENST00000566824 DARS2Q6PI48 645 aaKnown RBP19.71■□□□□ 0.75
CLN3-225ENST00000566824 RGL4Q8IZJ4 473 aa19.71■□□□□ 0.75
CLN3-225ENST00000566824 SPATA22Q8NHS9 363 aa19.71■□□□□ 0.75
CLN3-225ENST00000566824 SLC35B2Q8TB61 432 aa19.71■□□□□ 0.75
CLN3-225ENST00000566824 PDCD6IPQ8WUM4 868 aaKnown RBP19.71■□□□□ 0.75
CLN3-225ENST00000566824 UBE2Q2Q8WVN8 375 aa19.71■□□□□ 0.75
CLN3-225ENST00000566824 C1orf54Q8WWF1 131 aa19.71■□□□□ 0.75
CLN3-225ENST00000566824 RBM15Q96T37 977 aaKnown RBP eCLIP19.71■□□□□ 0.75
CLN3-225ENST00000566824 MIR1-1HGQ9H1L0 117 aa19.71■□□□□ 0.75
CLN3-225ENST00000566824 GLOD4Q9HC38 313 aa19.71■□□□□ 0.75
CLN3-225ENST00000566824 PREBQ9HCU5 417 aa19.71■□□□□ 0.75
CLN3-225ENST00000566824 SMARCAL1Q9NZC9 954 aa19.71■□□□□ 0.75
CLN3-225ENST00000566824 DNPEPQ9ULA0 475 aa19.71■□□□□ 0.75
CLN3-225ENST00000566824 PCDHB9Q9Y5E1 797 aa19.71■□□□□ 0.75
CLN3-225ENST00000566824 TP53BP1Q12888 1972 aaPredicted RBP19.7■□□□□ 0.74
CLN3-225ENST00000566824 CACNA1EQ15878 2313 aa19.7■□□□□ 0.74
CLN3-225ENST00000566824 LAMA1P25391 3075 aa19.7■□□□□ 0.74
CLN3-225ENST00000566824 A0A0U1RQS6 177 aa19.7■□□□□ 0.74
CLN3-225ENST00000566824 LATO43561 262 aa19.7■□□□□ 0.74
CLN3-225ENST00000566824 AP1G1O43747 822 aa19.7■□□□□ 0.74
CLN3-225ENST00000566824 FZD6O60353 706 aa19.7■□□□□ 0.74
CLN3-225ENST00000566824 PCDH8O95206 1070 aa19.7■□□□□ 0.74
CLN3-225ENST00000566824 PRLP01236 227 aa19.7■□□□□ 0.74
CLN3-225ENST00000566824 PRLRP16471 622 aa19.7■□□□□ 0.74
CLN3-225ENST00000566824 NFKB1P19838 968 aa19.7■□□□□ 0.74
CLN3-225ENST00000566824 KCTD19Q17RG1 926 aaPredicted RBP19.7■□□□□ 0.74
CLN3-225ENST00000566824 ZNF284Q2VY69 593 aa19.7■□□□□ 0.74
CLN3-225ENST00000566824 TMEM259Q4ZIN3 620 aa19.7■□□□□ 0.74
CLN3-225ENST00000566824 RALGPS1Q5JS13 557 aa19.7■□□□□ 0.74
CLN3-225ENST00000566824 PEAR1Q5VY43 1037 aaPredicted RBP19.7■□□□□ 0.74
CLN3-225ENST00000566824 TRIM69Q86WT6 500 aa19.7■□□□□ 0.74
CLN3-225ENST00000566824 SYT12Q8IV01 421 aa19.7■□□□□ 0.74
CLN3-225ENST00000566824 ZCCHC9Q8N567 271 aaKnown RBP19.7■□□□□ 0.74
CLN3-225ENST00000566824 HCAR2Q8TDS4 363 aa19.7■□□□□ 0.74
CLN3-225ENST00000566824 IMP4Q96G21 291 aaKnown RBP19.7■□□□□ 0.74
CLN3-225ENST00000566824 MS4A14Q96JA4 679 aa19.7■□□□□ 0.74
CLN3-225ENST00000566824 GORASP1Q9BQQ3 440 aa19.7■□□□□ 0.74
CLN3-225ENST00000566824 WRAP53Q9BUR4 548 aaKnown RBP19.7■□□□□ 0.74
CLN3-225ENST00000566824 KDM4CQ9H3R0 1056 aa19.7■□□□□ 0.74
CLN3-225ENST00000566824 UBP1Q9NZI7 540 aa19.7■□□□□ 0.74
CLN3-225ENST00000566824 CHKBQ9Y259 395 aa19.7■□□□□ 0.74
CLN3-225ENST00000566824 CA5BQ9Y2D0 317 aa19.7■□□□□ 0.74
CLN3-225ENST00000566824 PCDHGA5Q9Y5G8 931 aa19.7■□□□□ 0.74
CLN3-225ENST00000566824 PCDH15Q96QU1 1955 aa19.69■□□□□ 0.74
CLN3-225ENST00000566824 GOLGA6L9A6NEM1 432 aa19.69■□□□□ 0.74
CLN3-225ENST00000566824 IGLON5A6NGN9 336 aa19.69■□□□□ 0.74
CLN3-225ENST00000566824 A8MX80 341 aa19.69■□□□□ 0.74
CLN3-225ENST00000566824 RIOK3O14730 519 aaKnown RBP19.69■□□□□ 0.74
CLN3-225ENST00000566824 KCNN4O15554 427 aa19.69■□□□□ 0.74
CLN3-225ENST00000566824 MMP20O60882 483 aa19.69■□□□□ 0.74
CLN3-225ENST00000566824 SOCS5O75159 536 aa19.69■□□□□ 0.74
CLN3-225ENST00000566824 PGLSO95336 258 aa19.69■□□□□ 0.74
CLN3-225ENST00000566824 MT-CYBP00156 380 aaPredicted RBP19.69■□□□□ 0.74
CLN3-225ENST00000566824 FGGP02679 453 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms