RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 PEX5P50542 639 aa17.46■□□□□ 0.39
CLN3-217ENST00000565354 AP1B1Q10567 949 aa17.46■□□□□ 0.39
CLN3-217ENST00000565354 ZNF211Q13398 564 aaPredicted RBP17.46■□□□□ 0.39
CLN3-217ENST00000565354 RPS6KA1Q15418 735 aa17.46■□□□□ 0.39
CLN3-217ENST00000565354 TAZQ16635 292 aa17.46■□□□□ 0.39
CLN3-217ENST00000565354 WDR45BQ5MNZ6 344 aa17.46■□□□□ 0.39
CLN3-217ENST00000565354 SEL1L2Q5TEA6 688 aa17.46■□□□□ 0.39
CLN3-217ENST00000565354 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.46■□□□□ 0.39
CLN3-217ENST00000565354 CCDC13Q8IYE1 715 aa17.46■□□□□ 0.39
CLN3-217ENST00000565354 ALG3Q92685 438 aa17.46■□□□□ 0.39
CLN3-217ENST00000565354 HAUS1Q96CS2 278 aa17.46■□□□□ 0.39
CLN3-217ENST00000565354 HDAC11Q96DB2 347 aa17.46■□□□□ 0.39
CLN3-217ENST00000565354 GPR174Q9BXC1 333 aa17.46■□□□□ 0.39
CLN3-217ENST00000565354 OSBPL8Q9BZF1 889 aa17.46■□□□□ 0.39
CLN3-217ENST00000565354 SGK2Q9HBY8 427 aa17.46■□□□□ 0.39
CLN3-217ENST00000565354 TRMT1Q9NXH9 659 aaKnown RBP17.46■□□□□ 0.39
CLN3-217ENST00000565354 WSB2Q9NYS7 404 aaPredicted RBP17.46■□□□□ 0.39
CLN3-217ENST00000565354 PCOLCE2Q9UKZ9 415 aa17.46■□□□□ 0.39
CLN3-217ENST00000565354 SARDHQ9UL12 918 aa17.46■□□□□ 0.39
CLN3-217ENST00000565354 GOLGA6L9A6NEM1 432 aa17.45■□□□□ 0.38
CLN3-217ENST00000565354 FAM47DPA6NHR8 397 aa17.45■□□□□ 0.38
CLN3-217ENST00000565354 DDX3YO15523 660 aaKnown RBP17.45■□□□□ 0.38
CLN3-217ENST00000565354 GKP32189 559 aa17.45■□□□□ 0.38
CLN3-217ENST00000565354 ITKQ08881 620 aa17.45■□□□□ 0.38
CLN3-217ENST00000565354 SLC10A7Q0GE19 358 aa17.45■□□□□ 0.38
CLN3-217ENST00000565354 SLC10A2Q12908 348 aaPredicted RBP17.45■□□□□ 0.38
CLN3-217ENST00000565354 GRM3Q14832 879 aa17.45■□□□□ 0.38
CLN3-217ENST00000565354 CFAP58Q5T655 872 aa17.45■□□□□ 0.38
CLN3-217ENST00000565354 TSEN2Q8NCE0 465 aaKnown RBP17.45■□□□□ 0.38
CLN3-217ENST00000565354 OR14C36Q8NHC7 312 aa17.45■□□□□ 0.38
CLN3-217ENST00000565354 COL26A1Q96A83 441 aa17.45■□□□□ 0.38
CLN3-217ENST00000565354 HES6Q96HZ4 224 aa17.45■□□□□ 0.38
CLN3-217ENST00000565354 LRIG1Q96JA1 1093 aa17.45■□□□□ 0.38
CLN3-217ENST00000565354 OSBPL1AQ9BXW6 950 aa17.45■□□□□ 0.38
CLN3-217ENST00000565354 NEUROG2Q9H2A3 272 aa17.45■□□□□ 0.38
CLN3-217ENST00000565354 NT5MQ9NPB1 228 aa17.45■□□□□ 0.38
CLN3-217ENST00000565354 DKK4Q9UBT3 224 aa17.45■□□□□ 0.38
CLN3-217ENST00000565354 FZD4Q9ULV1 537 aa17.45■□□□□ 0.38
CLN3-217ENST00000565354 TTLL3Q9Y4R7 772 aa17.45■□□□□ 0.38
CLN3-217ENST00000565354 WASF2Q9Y6W5 498 aa17.45■□□□□ 0.38
CLN3-217ENST00000565354 SHROOM3Q8TF72 1996 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 KNTC1P50748 2209 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 LRRC72A6NJI9 287 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 EIF4E1BA6NMX2 242 aaKnown RBP17.44■□□□□ 0.38
CLN3-217ENST00000565354 MEI4A8MW99 385 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 PLK4O00444 970 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 MATN3O15232 486 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 TJP3O95049 919 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 SEMA4FO95754 770 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 IGLV3-19P01714 112 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 UGT2B4P06133 528 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 PYGMP11217 842 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 MSNP26038 577 aaKnown RBP17.44■□□□□ 0.38
CLN3-217ENST00000565354 MAOBP27338 520 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 SCNN1BP51168 640 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 MEI1Q5TIA1 1274 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 GDPD4Q6W3E5 623 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 BBS12Q6ZW61 710 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 SRLQ86TD4 932 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 AADATQ8N5Z0 425 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 LRRN4Q8WUT4 740 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 DNASE2BQ8WZ79 361 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 ARRDC3Q96B67 414 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 TSGA13Q96PP4 275 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 PSKH2Q96QS6 385 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 LGMNQ99538 433 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 BRD8Q9H0E9 1235 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 SEPT10Q9P0V9 454 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 SERGEFQ9UGK8 458 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 EFR3BQ9Y2G0 817 aa17.44■□□□□ 0.38
CLN3-217ENST00000565354 KALRNO60229 2985 aa17.43■□□□□ 0.38
CLN3-217ENST00000565354 A0A1B0GTW7 788 aa17.43■□□□□ 0.38
CLN3-217ENST00000565354 SLC7A4O43246 635 aa17.43■□□□□ 0.38
CLN3-217ENST00000565354 ZNF883P0CG24 379 aa17.43■□□□□ 0.38
CLN3-217ENST00000565354 C7P10643 843 aa17.43■□□□□ 0.38
CLN3-217ENST00000565354 CCNB1P14635 433 aa17.43■□□□□ 0.38
CLN3-217ENST00000565354 XPAP23025 273 aaPredicted RBP17.43■□□□□ 0.38
CLN3-217ENST00000565354 ACSL1P33121 698 aa17.43■□□□□ 0.38
CLN3-217ENST00000565354 PTPN7P35236 360 aa17.43■□□□□ 0.38
CLN3-217ENST00000565354 NEK3P51956 506 aa17.43■□□□□ 0.38
CLN3-217ENST00000565354 METAP1P53582 386 aa17.43■□□□□ 0.38
CLN3-217ENST00000565354 PPIDQ08752 370 aaKnown RBP17.43■□□□□ 0.38
CLN3-217ENST00000565354 NSUN2Q08J23 767 aaKnown RBP eCLIP17.43■□□□□ 0.38
CLN3-217ENST00000565354 CNTN1Q12860 1018 aa17.43■□□□□ 0.38
CLN3-217ENST00000565354 AADACL2Q6P093 401 aa17.43■□□□□ 0.38
CLN3-217ENST00000565354 FBXL19Q6PCT2 694 aa17.43■□□□□ 0.38
CLN3-217ENST00000565354 ERN2Q76MJ5 926 aaKnown RBP17.43■□□□□ 0.38
CLN3-217ENST00000565354 TMPRSS7Q7RTY8 843 aa17.43■□□□□ 0.38
CLN3-217ENST00000565354 SETD7Q8WTS6 366 aaKnown RBP17.43■□□□□ 0.38
CLN3-217ENST00000565354 TFB1MQ8WVM0 346 aaKnown RBP17.43■□□□□ 0.38
CLN3-217ENST00000565354 SNX19Q92543 992 aa17.43■□□□□ 0.38
CLN3-217ENST00000565354 KLHL32Q96NJ5 620 aa17.43■□□□□ 0.38
CLN3-217ENST00000565354 FERMT1Q9BQL6 677 aa17.43■□□□□ 0.38
CLN3-217ENST00000565354 ATP13A3Q9H7F0 1226 aa17.43■□□□□ 0.38
CLN3-217ENST00000565354 RBM22Q9NW64 420 aaKnown RBP eCLIP17.43■□□□□ 0.38
CLN3-217ENST00000565354 SAE1Q9UBE0 346 aaPredicted RBP17.43■□□□□ 0.38
CLN3-217ENST00000565354 H7C0C1 242 aa17.42■□□□□ 0.38
CLN3-217ENST00000565354 APOC4-APOC2K7ER74 178 aa17.42■□□□□ 0.38
CLN3-217ENST00000565354 INSIG1O15503 277 aa17.42■□□□□ 0.38
CLN3-217ENST00000565354 KIF5CO60282 957 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms