RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 SRLQ86TD4 932 aa22.69■■□□□ 1.22
CLN3-215ENST00000565236 CAMK1DQ8IU85 385 aa22.69■■□□□ 1.22
CLN3-215ENST00000565236 ARHGAP12Q8IWW6 846 aa22.69■■□□□ 1.22
CLN3-215ENST00000565236 LZTR1Q8N653 840 aa22.69■■□□□ 1.22
CLN3-215ENST00000565236 TSEN2Q8NCE0 465 aaKnown RBP22.69■■□□□ 1.22
CLN3-215ENST00000565236 ZNF548Q8NEK5 533 aaPredicted RBP22.69■■□□□ 1.22
CLN3-215ENST00000565236 APOLD1Q96LR9 279 aa22.69■■□□□ 1.22
CLN3-215ENST00000565236 TUBGCP5Q96RT8 1024 aa22.69■■□□□ 1.22
CLN3-215ENST00000565236 CINPQ9BW66 212 aaPredicted RBP22.69■■□□□ 1.22
CLN3-215ENST00000565236 EVA1BQ9NVM1 165 aa22.69■■□□□ 1.22
CLN3-215ENST00000565236 KLF15Q9UIH9 416 aa22.69■■□□□ 1.22
CLN3-215ENST00000565236 LHX6Q9UPM6 363 aa22.69■■□□□ 1.22
CLN3-215ENST00000565236 CSNK1G3Q9Y6M4 447 aa22.69■■□□□ 1.22
CLN3-215ENST00000565236 LAMA5O15230 3695 aa22.69■■□□□ 1.22
CLN3-215ENST00000565236 ZFYVE26Q68DK2 2539 aa22.68■■□□□ 1.22
CLN3-215ENST00000565236 TSPAN11A1L157 253 aa22.68■■□□□ 1.22
CLN3-215ENST00000565236 H3BRJ5 948 aa22.68■■□□□ 1.22
CLN3-215ENST00000565236 BUB1BO60566 1050 aaPredicted RBP22.68■■□□□ 1.22
CLN3-215ENST00000565236 SERPING1P05155 500 aa22.68■■□□□ 1.22
CLN3-215ENST00000565236 IGFALSP35858 605 aa22.68■■□□□ 1.22
CLN3-215ENST00000565236 ARL4AP40617 200 aa22.68■■□□□ 1.22
CLN3-215ENST00000565236 DUSP3P51452 185 aaPredicted RBP22.68■■□□□ 1.22
CLN3-215ENST00000565236 ZBED6P86452 979 aa22.68■■□□□ 1.22
CLN3-215ENST00000565236 IL10RBQ08334 325 aa22.68■■□□□ 1.22
CLN3-215ENST00000565236 EIF2B5Q13144 721 aaKnown RBP22.68■■□□□ 1.22
CLN3-215ENST00000565236 RFTN1Q14699 578 aaPredicted RBP22.68■■□□□ 1.22
CLN3-215ENST00000565236 CACTIN-AS1Q8N1I8 211 aa22.68■■□□□ 1.22
CLN3-215ENST00000565236 NPWQ8N729 165 aa22.68■■□□□ 1.22
CLN3-215ENST00000565236 PAF1Q8N7H5 531 aa22.68■■□□□ 1.22
CLN3-215ENST00000565236 BTN2A2Q8WVV5 523 aa22.68■■□□□ 1.22
CLN3-215ENST00000565236 RFFLQ8WZ73 363 aa22.68■■□□□ 1.22
CLN3-215ENST00000565236 NXPE2Q96DL1 559 aa22.68■■□□□ 1.22
CLN3-215ENST00000565236 IQCDQ96DY2 449 aa22.68■■□□□ 1.22
CLN3-215ENST00000565236 ATP13A3Q9H7F0 1226 aa22.68■■□□□ 1.22
CLN3-215ENST00000565236 PCDH12Q9NPG4 1184 aa22.68■■□□□ 1.22
CLN3-215ENST00000565236 MBNL1Q9NR56 388 aaKnown RBP22.68■■□□□ 1.22
CLN3-215ENST00000565236 CAPN11Q9UMQ6 739 aa22.68■■□□□ 1.22
CLN3-215ENST00000565236 CLCA2Q9UQC9 943 aa22.68■■□□□ 1.22
CLN3-215ENST00000565236 GPSM3Q9Y4H4 160 aa22.68■■□□□ 1.22
CLN3-215ENST00000565236 MYLKQ15746 1914 aa22.67■■□□□ 1.22
CLN3-215ENST00000565236 TOR1BO14657 336 aa22.67■■□□□ 1.22
CLN3-215ENST00000565236 AQP9O43315 295 aa22.67■■□□□ 1.22
CLN3-215ENST00000565236 IL1R2P27930 398 aa22.67■■□□□ 1.22
CLN3-215ENST00000565236 SERPINA4P29622 427 aa22.67■■□□□ 1.22
CLN3-215ENST00000565236 RGRP47804 291 aa22.67■■□□□ 1.22
CLN3-215ENST00000565236 INSM1Q01101 510 aaPredicted RBP22.67■■□□□ 1.22
CLN3-215ENST00000565236 NSUN2Q08J23 767 aaKnown RBP eCLIP22.67■■□□□ 1.22
CLN3-215ENST00000565236 DPYSQ14117 519 aa22.67■■□□□ 1.22
CLN3-215ENST00000565236 PIGHQ14442 188 aaPredicted RBP22.67■■□□□ 1.22
CLN3-215ENST00000565236 LRRC14Q15048 493 aa22.67■■□□□ 1.22
CLN3-215ENST00000565236 NFKBIBQ15653 356 aa22.67■■□□□ 1.22
CLN3-215ENST00000565236 C19orf48Q6RUI8 117 aa22.67■■□□□ 1.22
CLN3-215ENST00000565236 ARHGAP36Q6ZRI8 547 aa22.67■■□□□ 1.22
CLN3-215ENST00000565236 FAM181AQ8N9Y4 354 aa22.67■■□□□ 1.22
CLN3-215ENST00000565236 TP53I13Q8NBR0 393 aaPredicted RBP22.67■■□□□ 1.22
CLN3-215ENST00000565236 LMX1AQ8TE12 382 aa22.67■■□□□ 1.22
CLN3-215ENST00000565236 HSPH1Q92598 858 aa22.67■■□□□ 1.22
CLN3-215ENST00000565236 USP29Q9HBJ7 922 aa22.67■■□□□ 1.22
CLN3-215ENST00000565236 LUC7L2Q9Y383 392 aaKnown RBP22.67■■□□□ 1.22
CLN3-215ENST00000565236 AK5Q9Y6K8 562 aa22.67■■□□□ 1.22
CLN3-215ENST00000565236 RIOK3O14730 519 aaKnown RBP22.66■■□□□ 1.22
CLN3-215ENST00000565236 MYF5P13349 255 aa22.66■■□□□ 1.22
CLN3-215ENST00000565236 EIF4A3P38919 411 aaKnown RBP22.66■■□□□ 1.22
CLN3-215ENST00000565236 BCL2L1Q07817 233 aa22.66■■□□□ 1.22
CLN3-215ENST00000565236 DPYSL2Q16555 572 aa22.66■■□□□ 1.22
CLN3-215ENST00000565236 SMTNL2Q2TAL5 461 aa22.66■■□□□ 1.22
CLN3-215ENST00000565236 ZCCHC8Q6NZY4 707 aaKnown RBP22.66■■□□□ 1.22
CLN3-215ENST00000565236 IL12RB2Q99665 862 aa22.66■■□□□ 1.22
CLN3-215ENST00000565236 THAP2Q9H0W7 228 aa22.66■■□□□ 1.22
CLN3-215ENST00000565236 SPASTQ9UBP0 616 aa22.66■■□□□ 1.22
CLN3-215ENST00000565236 COQ6Q9Y2Z9 468 aa22.66■■□□□ 1.22
CLN3-215ENST00000565236 NBEAQ8NFP9 2946 aa22.66■■□□□ 1.22
CLN3-215ENST00000565236 MT-CO3P00414 261 aa22.65■■□□□ 1.22
CLN3-215ENST00000565236 C6P13671 934 aa22.65■■□□□ 1.22
CLN3-215ENST00000565236 TCF4P15884 667 aa22.65■■□□□ 1.22
CLN3-215ENST00000565236 PTMSP20962 102 aa22.65■■□□□ 1.22
CLN3-215ENST00000565236 AMPD1P23109 780 aa22.65■■□□□ 1.22
CLN3-215ENST00000565236 LIG3P49916 1009 aa22.65■■□□□ 1.22
CLN3-215ENST00000565236 SCNN1BP51168 640 aa22.65■■□□□ 1.22
CLN3-215ENST00000565236 RENBPP51606 427 aa22.65■■□□□ 1.22
CLN3-215ENST00000565236 POLR2LP62875 67 aaKnown RBP22.65■■□□□ 1.22
CLN3-215ENST00000565236 IRF4Q15306 451 aa22.65■■□□□ 1.22
CLN3-215ENST00000565236 FAXCQ5TGI0 409 aa22.65■■□□□ 1.22
CLN3-215ENST00000565236 POLNQ7Z5Q5 900 aa22.65■■□□□ 1.22
CLN3-215ENST00000565236 DCBLD1Q8N8Z6 715 aa22.65■■□□□ 1.22
CLN3-215ENST00000565236 SLC13A1Q9BZW2 595 aa22.65■■□□□ 1.22
CLN3-215ENST00000565236 NRSN2Q9GZP1 204 aa22.65■■□□□ 1.22
CLN3-215ENST00000565236 STAU2Q9NUL3 570 aaKnown RBP eCLIP22.65■■□□□ 1.22
CLN3-215ENST00000565236 NCKIPSDQ9NZQ3 722 aa22.65■■□□□ 1.22
CLN3-215ENST00000565236 IFNKQ9P0W0 207 aa22.65■■□□□ 1.22
CLN3-215ENST00000565236 SEPT3Q9UH03 358 aa22.65■■□□□ 1.22
CLN3-215ENST00000565236 APOBEC3BQ9UH17 382 aaKnown RBP22.65■■□□□ 1.22
CLN3-215ENST00000565236 IP6K2Q9UHH9 426 aa22.65■■□□□ 1.22
CLN3-215ENST00000565236 ATP8A1Q9Y2Q0 1164 aa22.65■■□□□ 1.22
CLN3-215ENST00000565236 A0A087X0T9 212 aa22.64■■□□□ 1.21
CLN3-215ENST00000565236 TPP1O14773 563 aa22.64■■□□□ 1.21
CLN3-215ENST00000565236 LZTS3O60299 673 aaPredicted RBP22.64■■□□□ 1.21
CLN3-215ENST00000565236 OPA1O60313 960 aa22.64■■□□□ 1.21
CLN3-215ENST00000565236 GP1BAP07359 652 aa22.64■■□□□ 1.21
CLN3-215ENST00000565236 FAM228BP0C875 321 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms