RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 RASA4O43374 803 aa17.04■□□□□ 0.32
CLN3-211ENST00000564091 CREB3O43889 395 aa17.04■□□□□ 0.32
CLN3-211ENST00000564091 TCEA3O75764 348 aa17.04■□□□□ 0.32
CLN3-211ENST00000564091 TNFSF15O95150 251 aa17.04■□□□□ 0.32
CLN3-211ENST00000564091 XPAP23025 273 aaPredicted RBP17.04■□□□□ 0.32
CLN3-211ENST00000564091 RHDQ02161 417 aa17.04■□□□□ 0.32
CLN3-211ENST00000564091 CYTH1Q15438 398 aa17.04■□□□□ 0.32
CLN3-211ENST00000564091 CLEC16AQ2KHT3 1053 aa17.04■□□□□ 0.32
CLN3-211ENST00000564091 WSCD2Q2TBF2 565 aa17.04■□□□□ 0.32
CLN3-211ENST00000564091 EFHC2Q5JST6 749 aa17.04■□□□□ 0.32
CLN3-211ENST00000564091 ESRP1Q6NXG1 681 aaKnown RBP17.04■□□□□ 0.32
CLN3-211ENST00000564091 RD3Q7Z3Z2 195 aa17.04■□□□□ 0.32
CLN3-211ENST00000564091 HID1Q8IV36 788 aa17.04■□□□□ 0.32
CLN3-211ENST00000564091 ENOX1Q8TC92 643 aaKnown RBP17.04■□□□□ 0.32
CLN3-211ENST00000564091 CASKIN2Q8WXE0 1202 aa17.04■□□□□ 0.32
CLN3-211ENST00000564091 NAT6Q93015 286 aa17.04■□□□□ 0.32
CLN3-211ENST00000564091 TBATAQ96M53 351 aa17.04■□□□□ 0.32
CLN3-211ENST00000564091 SEMA4CQ9C0C4 833 aa17.04■□□□□ 0.32
CLN3-211ENST00000564091 SEPT11Q9NVA2 429 aaKnown RBP17.04■□□□□ 0.32
CLN3-211ENST00000564091 CHMP5Q9NZZ3 219 aa17.04■□□□□ 0.32
CLN3-211ENST00000564091 SIRPGQ9P1W8 387 aa17.04■□□□□ 0.32
CLN3-211ENST00000564091 LHX3Q9UBR4 397 aa17.04■□□□□ 0.32
CLN3-211ENST00000564091 DOLKQ9UPQ8 538 aa17.04■□□□□ 0.32
CLN3-211ENST00000564091 TRPM6Q9BX84 2022 aa17.04■□□□□ 0.32
CLN3-211ENST00000564091 SIGLEC16A6NMB1 481 aa17.03■□□□□ 0.32
CLN3-211ENST00000564091 GSCP56915 257 aaPredicted RBP17.03■□□□□ 0.32
CLN3-211ENST00000564091 SKOR1P84550 965 aa17.03■□□□□ 0.32
CLN3-211ENST00000564091 VAC14Q08AM6 782 aa17.03■□□□□ 0.32
CLN3-211ENST00000564091 SERINC3Q13530 473 aa17.03■□□□□ 0.32
CLN3-211ENST00000564091 SPIDRQ14159 915 aa17.03■□□□□ 0.32
CLN3-211ENST00000564091 LRRC14Q15048 493 aa17.03■□□□□ 0.32
CLN3-211ENST00000564091 ALG11Q2TAA5 492 aa17.03■□□□□ 0.32
CLN3-211ENST00000564091 TMEM52BQ4KMG9 183 aa17.03■□□□□ 0.32
CLN3-211ENST00000564091 CT47A1Q5JQC4 288 aaPredicted RBP17.03■□□□□ 0.32
CLN3-211ENST00000564091 FKBP15Q5T1M5 1219 aa17.03■□□□□ 0.32
CLN3-211ENST00000564091 CDKAL1Q5VV42 579 aa17.03■□□□□ 0.32
CLN3-211ENST00000564091 ENPP7Q6UWV6 458 aa17.03■□□□□ 0.32
CLN3-211ENST00000564091 PHF13Q86YI8 300 aaPredicted RBP17.03■□□□□ 0.32
CLN3-211ENST00000564091 C3orf20Q8ND61 904 aa17.03■□□□□ 0.32
CLN3-211ENST00000564091 WDR36Q8NI36 951 aaKnown RBP17.03■□□□□ 0.32
CLN3-211ENST00000564091 PCDH19Q8TAB3 1148 aa17.03■□□□□ 0.32
CLN3-211ENST00000564091 NCAPGQ9BPX3 1015 aa17.03■□□□□ 0.32
CLN3-211ENST00000564091 PCDH12Q9NPG4 1184 aa17.03■□□□□ 0.32
CLN3-211ENST00000564091 RABGEF1Q9UJ41 708 aa17.03■□□□□ 0.32
CLN3-211ENST00000564091 SIK3Q9Y2K2 1263 aa17.03■□□□□ 0.32
CLN3-211ENST00000564091 ASH1LQ9NR48 2969 aaKnown RBP17.02■□□□□ 0.32
CLN3-211ENST00000564091 TDRD6O60522 2096 aaKnown RBP17.02■□□□□ 0.32
CLN3-211ENST00000564091 CDRT15L2A8MXV6 281 aa17.02■□□□□ 0.32
CLN3-211ENST00000564091 TOR1BO14657 336 aa17.02■□□□□ 0.32
CLN3-211ENST00000564091 PRKCGP05129 697 aa17.02■□□□□ 0.32
CLN3-211ENST00000564091 CALB1P05937 261 aa17.02■□□□□ 0.32
CLN3-211ENST00000564091 C6P13671 934 aa17.02■□□□□ 0.32
CLN3-211ENST00000564091 ZNF143P52747 638 aaPredicted RBP17.02■□□□□ 0.32
CLN3-211ENST00000564091 HK3P52790 923 aa17.02■□□□□ 0.32
CLN3-211ENST00000564091 YBEYP58557 167 aaPredicted RBP17.02■□□□□ 0.32
CLN3-211ENST00000564091 RPL7AP62424 266 aaKnown RBP17.02■□□□□ 0.32
CLN3-211ENST00000564091 LY6DQ14210 128 aa17.02■□□□□ 0.32
CLN3-211ENST00000564091 INPP5AQ14642 412 aa17.02■□□□□ 0.32
CLN3-211ENST00000564091 SYCP1Q15431 976 aa17.02■□□□□ 0.32
CLN3-211ENST00000564091 UGP2Q16851 508 aa17.02■□□□□ 0.32
CLN3-211ENST00000564091 PARP15Q460N3 678 aa17.02■□□□□ 0.32
CLN3-211ENST00000564091 DNAJC24Q6P3W2 148 aa17.02■□□□□ 0.32
CLN3-211ENST00000564091 FSTL5Q8N475 847 aaPredicted RBP17.02■□□□□ 0.32
CLN3-211ENST00000564091 ARL14Q8N4G2 192 aa17.02■□□□□ 0.32
CLN3-211ENST00000564091 ARL10Q8N8L6 244 aa17.02■□□□□ 0.32
CLN3-211ENST00000564091 KYQ8NBH2 561 aa17.02■□□□□ 0.32
CLN3-211ENST00000564091 TTC9Q92623 222 aa17.02■□□□□ 0.32
CLN3-211ENST00000564091 PCMTD1Q96MG8 357 aaPredicted RBP17.02■□□□□ 0.32
CLN3-211ENST00000564091 CPEB1Q9BZB8 566 aaKnown RBP17.02■□□□□ 0.32
CLN3-211ENST00000564091 EDEM3Q9BZQ6 932 aa17.02■□□□□ 0.32
CLN3-211ENST00000564091 SUV39H2Q9H5I1 410 aa17.02■□□□□ 0.32
CLN3-211ENST00000564091 FANCLQ9NW38 375 aa17.02■□□□□ 0.32
CLN3-211ENST00000564091 WDR70Q9NW82 654 aa17.02■□□□□ 0.32
CLN3-211ENST00000564091 FZD10Q9ULW2 581 aa17.02■□□□□ 0.32
CLN3-211ENST00000564091 SSUH2Q9Y2M2 353 aa17.02■□□□□ 0.32
CLN3-211ENST00000564091 DAAM1Q9Y4D1 1078 aa17.02■□□□□ 0.32
CLN3-211ENST00000564091 OR1A2Q9Y585 309 aa17.02■□□□□ 0.32
CLN3-211ENST00000564091 TCRBV5S1A1TA0A578 114 aa17.01■□□□□ 0.31
CLN3-211ENST00000564091 WASH4PA8MWX3 477 aa17.01■□□□□ 0.31
CLN3-211ENST00000564091 J3KR12 359 aa17.01■□□□□ 0.31
CLN3-211ENST00000564091 NTN3O00634 580 aaPredicted RBP17.01■□□□□ 0.31
CLN3-211ENST00000564091 BUB1BO60566 1050 aaPredicted RBP17.01■□□□□ 0.31
CLN3-211ENST00000564091 TPM2P07951 284 aa17.01■□□□□ 0.31
CLN3-211ENST00000564091 CTSEP14091 401 aa17.01■□□□□ 0.31
CLN3-211ENST00000564091 PEX5P50542 639 aa17.01■□□□□ 0.31
CLN3-211ENST00000564091 BLKP51451 505 aa17.01■□□□□ 0.31
CLN3-211ENST00000564091 ELP6Q0PNE2 266 aa17.01■□□□□ 0.31
CLN3-211ENST00000564091 NFATC4Q14934 902 aa17.01■□□□□ 0.31
CLN3-211ENST00000564091 ELOCQ15369 112 aa17.01■□□□□ 0.31
CLN3-211ENST00000564091 KIAA1614Q5VZ46 1190 aa17.01■□□□□ 0.31
CLN3-211ENST00000564091 KCTD16Q68DU8 428 aa17.01■□□□□ 0.31
CLN3-211ENST00000564091 MON1BQ7L1V2 547 aa17.01■□□□□ 0.31
CLN3-211ENST00000564091 B3GNT8Q7Z7M8 397 aa17.01■□□□□ 0.31
CLN3-211ENST00000564091 UMODL1-AS1Q8N2C9 162 aa17.01■□□□□ 0.31
CLN3-211ENST00000564091 WDR48Q8TAF3 677 aa17.01■□□□□ 0.31
CLN3-211ENST00000564091 SNRNP27Q8WVK2 155 aaKnown RBP17.01■□□□□ 0.31
CLN3-211ENST00000564091 CCDC74AQ96AQ1 378 aa17.01■□□□□ 0.31
CLN3-211ENST00000564091 WBP1Q96G27 269 aa17.01■□□□□ 0.31
CLN3-211ENST00000564091 MCEEQ96PE7 176 aa17.01■□□□□ 0.31
CLN3-211ENST00000564091 APOOQ9BUR5 198 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 366.8 ms