RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 CARM1Q86X55 608 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 CANT1Q8WVQ1 401 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 KCTD13Q8WZ19 329 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 LRCH3Q96II8 777 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 OLFM1Q99784 485 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 MROH8Q9H579 483 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 SOCS2O14508 198 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 TRIM24O15164 1050 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 NPHS1O60500 1241 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 GNAO1P09471 354 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 COL6A2P12110 1019 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 ZNF23P17027 643 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 PNPLA4P41247 253 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 ADARP55265 1226 aaKnown RBP13.31□□□□□ -0.28
CLN3-210ENST00000563874 SCAPQ12770 1279 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 DENND5AQ6IQ26 1287 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 LINC00523Q86TU6 105 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 ZMIZ2Q8NF64 920 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 DNAJB3Q8WWF6 145 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 RMND5BQ96G75 393 aaPredicted RBP13.31□□□□□ -0.28
CLN3-210ENST00000563874 PCED1BQ96HM7 432 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 HAUS8Q9BT25 410 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 OSBPL11Q9BXB4 747 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 UTP6Q9NYH9 597 aaKnown RBP13.31□□□□□ -0.28
CLN3-210ENST00000563874 GIMAP2Q9UG22 337 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 AURKCQ9UQB9 309 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 MYRFQ9Y2G1 1151 aa13.31□□□□□ -0.28
CLN3-210ENST00000563874 A8MT66 165 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 CCL22O00626 93 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 HTRA2O43464 458 aaPredicted RBP13.3□□□□□ -0.28
CLN3-210ENST00000563874 SEC24DO94855 1032 aaPredicted RBP13.3□□□□□ -0.28
CLN3-210ENST00000563874 DARSP14868 501 aaKnown RBP13.3□□□□□ -0.28
CLN3-210ENST00000563874 CPB1P15086 417 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 SOX11P35716 441 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 ETFBP38117 255 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 STT3AP46977 705 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 CD151P48509 253 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 EMP3P54852 163 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 TXNL4AP83876 142 aaKnown RBP13.3□□□□□ -0.28
CLN3-210ENST00000563874 DCTN2Q13561 401 aaKnown RBP13.3□□□□□ -0.28
CLN3-210ENST00000563874 BTBD8Q5XKL5 378 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 LDB1Q86U70 411 aaPredicted RBP13.3□□□□□ -0.28
CLN3-210ENST00000563874 ERO1BQ86YB8 467 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 PPHLN1Q8NEY8 458 aaKnown RBP13.3□□□□□ -0.28
CLN3-210ENST00000563874 SNRNP27Q8WVK2 155 aaKnown RBP13.3□□□□□ -0.28
CLN3-210ENST00000563874 HSPBAP1Q96EW2 488 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 VAT1Q99536 393 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 TRIM8Q9BZR9 551 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 IGSF5Q9NSI5 407 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.3□□□□□ -0.28
CLN3-210ENST00000563874 FBXO5Q9UKT4 447 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 SBF1O95248 1867 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 MEIS3P2A8K0S8 358 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 H3BNH8 94 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 SNRPB2P08579 225 aaKnown RBP13.3□□□□□ -0.28
CLN3-210ENST00000563874 CCDC166P0CW27 439 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 SMPD1P17405 629 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 WARSP23381 471 aaKnown RBP13.3□□□□□ -0.28
CLN3-210ENST00000563874 LRPAP1P30533 357 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 PLOD1Q02809 727 aaPredicted RBP13.3□□□□□ -0.28
CLN3-210ENST00000563874 FAM83EQ2M2I3 478 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 CHSY3Q70JA7 882 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 EXT2Q93063 718 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 SLC45A3Q96JT2 553 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 FSD1LQ9BXM9 530 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 TIMMDC1Q9NPL8 285 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 DNAAF2Q9NVR5 837 aaKnown RBP13.3□□□□□ -0.28
CLN3-210ENST00000563874 CNOT11Q9UKZ1 510 aaKnown RBP13.3□□□□□ -0.28
CLN3-210ENST00000563874 PTGDR2Q9Y5Y4 395 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 ZSWIM8A7E2V4 1837 aa13.3□□□□□ -0.28
CLN3-210ENST00000563874 CROCCQ5TZA2 2017 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 MMP3P08254 477 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 HCAR3P49019 387 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 SQLEQ14534 574 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 BORAQ6PGQ7 559 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 FAM35AQ86V20 835 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 ARL10Q8N8L6 244 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 DPF3Q92784 378 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 NDFIP2Q9NV92 336 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 ARHGEF38Q9NXL2 777 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 THEGQ9P2T0 379 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 EGFL7Q9UHF1 273 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 CROTQ9UKG9 612 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 RAD54BQ9Y620 910 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 BTBD19C9JJ37 291 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 UBFD1O14562 309 aaKnown RBP13.29□□□□□ -0.28
CLN3-210ENST00000563874 FOXD2O60548 495 aaPredicted RBP13.29□□□□□ -0.28
CLN3-210ENST00000563874 IPO13O94829 963 aaKnown RBP13.29□□□□□ -0.28
CLN3-210ENST00000563874 ATP6V1B2P21281 511 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 SLC7A1P30825 629 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 IREB2P48200 963 aaKnown RBP13.29□□□□□ -0.28
CLN3-210ENST00000563874 CDH13P55290 713 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 CREB5Q02930 508 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 LIMS2Q7Z4I7 341 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 TAC4Q86UU9 113 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 CNTN4Q8IWV2 1026 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 FIBCD1Q8N539 461 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 ATPAF2Q8N5M1 289 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 ANKRD49Q8WVL7 239 aa13.29□□□□□ -0.28
CLN3-210ENST00000563874 DCUN1D5Q9BTE7 237 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms