RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 TMCO4Q5TGY1 634 aa17.01■□□□□ 0.31
CLK3-210ENST00000563112 POLNQ7Z5Q5 900 aa17.01■□□□□ 0.31
CLK3-210ENST00000563112 NPWQ8N729 165 aa17.01■□□□□ 0.31
CLK3-210ENST00000563112 TSEN2Q8NCE0 465 aaKnown RBP17.01■□□□□ 0.31
CLK3-210ENST00000563112 OR4C6Q8NH72 309 aa17.01■□□□□ 0.31
CLK3-210ENST00000563112 TEKT4Q8WW24 435 aa17.01■□□□□ 0.31
CLK3-210ENST00000563112 ZNF599Q96NL3 588 aa17.01■□□□□ 0.31
CLK3-210ENST00000563112 WRAP53Q9BUR4 548 aaKnown RBP17.01■□□□□ 0.31
CLK3-210ENST00000563112 GPR27Q9NS67 375 aa17.01■□□□□ 0.31
CLK3-210ENST00000563112 EVA1BQ9NVM1 165 aa17.01■□□□□ 0.31
CLK3-210ENST00000563112 ZNHIT6Q9NWK9 470 aaKnown RBP17.01■□□□□ 0.31
CLK3-210ENST00000563112 UCKL1Q9NWZ5 548 aa17.01■□□□□ 0.31
CLK3-210ENST00000563112 SEPT3Q9UH03 358 aa17.01■□□□□ 0.31
CLK3-210ENST00000563112 SRRM3A6NNA2 597 aaPredicted RBP17■□□□□ 0.31
CLK3-210ENST00000563112 TRIM38O00635 465 aa17■□□□□ 0.31
CLK3-210ENST00000563112 TOR1BO14657 336 aa17■□□□□ 0.31
CLK3-210ENST00000563112 CSF2P04141 144 aa17■□□□□ 0.31
CLK3-210ENST00000563112 TPM1P09493 284 aa17■□□□□ 0.31
CLK3-210ENST00000563112 NME1P15531 152 aaKnown RBP17■□□□□ 0.31
CLK3-210ENST00000563112 ITIH2P19823 946 aa17■□□□□ 0.31
CLK3-210ENST00000563112 SERPINB6P35237 376 aa17■□□□□ 0.31
CLK3-210ENST00000563112 EIF4A3P38919 411 aaKnown RBP17■□□□□ 0.31
CLK3-210ENST00000563112 PFN3P60673 137 aa17■□□□□ 0.31
CLK3-210ENST00000563112 YPEL5P62699 121 aa17■□□□□ 0.31
CLK3-210ENST00000563112 POLR2LP62875 67 aaKnown RBP17■□□□□ 0.31
CLK3-210ENST00000563112 BCL2L1Q07817 233 aa17■□□□□ 0.31
CLK3-210ENST00000563112 KRT81Q14533 505 aa17■□□□□ 0.31
CLK3-210ENST00000563112 LBRQ14739 615 aaKnown RBP17■□□□□ 0.31
CLK3-210ENST00000563112 TSR1Q2NL82 804 aaKnown RBP17■□□□□ 0.31
CLK3-210ENST00000563112 ARHGAP36Q6ZRI8 547 aa17■□□□□ 0.31
CLK3-210ENST00000563112 CAMK1DQ8IU85 385 aa17■□□□□ 0.31
CLK3-210ENST00000563112 BBS5Q8N3I7 341 aa17■□□□□ 0.31
CLK3-210ENST00000563112 PDCD7Q8N8D1 485 aaKnown RBP17■□□□□ 0.31
CLK3-210ENST00000563112 NSMCE1Q8WV22 266 aa17■□□□□ 0.31
CLK3-210ENST00000563112 BTN2A2Q8WVV5 523 aa17■□□□□ 0.31
CLK3-210ENST00000563112 CENPTQ96BT3 561 aa17■□□□□ 0.31
CLK3-210ENST00000563112 BTBD6Q96KE9 485 aa17■□□□□ 0.31
CLK3-210ENST00000563112 CSPG4P5Q96PW8 444 aa17■□□□□ 0.31
CLK3-210ENST00000563112 DUSP23Q9BVJ7 150 aa17■□□□□ 0.31
CLK3-210ENST00000563112 PCDH12Q9NPG4 1184 aa17■□□□□ 0.31
CLK3-210ENST00000563112 NLGN3Q9NZ94 848 aa17■□□□□ 0.31
CLK3-210ENST00000563112 FAM149AA5PLN7 773 aa16.99■□□□□ 0.31
CLK3-210ENST00000563112 TRABD2BA6NFA1 517 aa16.99■□□□□ 0.31
CLK3-210ENST00000563112 RIOK3O14730 519 aaKnown RBP16.99■□□□□ 0.31
CLK3-210ENST00000563112 SCAMP1O15126 338 aa16.99■□□□□ 0.31
CLK3-210ENST00000563112 BUB1BO60566 1050 aaPredicted RBP16.99■□□□□ 0.31
CLK3-210ENST00000563112 TCF4P15884 667 aa16.99■□□□□ 0.31
CLK3-210ENST00000563112 ACP1P24666 158 aa16.99■□□□□ 0.31
CLK3-210ENST00000563112 HNRNPH3P31942 346 aaKnown RBP16.99■□□□□ 0.31
CLK3-210ENST00000563112 HSPA9P38646 679 aaKnown RBP16.99■□□□□ 0.31
CLK3-210ENST00000563112 RGRP47804 291 aa16.99■□□□□ 0.31
CLK3-210ENST00000563112 SCNN1BP51168 640 aa16.99■□□□□ 0.31
CLK3-210ENST00000563112 AP1S1P61966 158 aa16.99■□□□□ 0.31
CLK3-210ENST00000563112 E2F1Q01094 437 aa16.99■□□□□ 0.31
CLK3-210ENST00000563112 ZNF235Q14590 738 aa16.99■□□□□ 0.31
CLK3-210ENST00000563112 SPECC1LQ69YQ0 1117 aa16.99■□□□□ 0.31
CLK3-210ENST00000563112 OR8K1Q8NGG5 319 aa16.99■□□□□ 0.31
CLK3-210ENST00000563112 ZNF564Q8TBZ8 553 aaPredicted RBP16.99■□□□□ 0.31
CLK3-210ENST00000563112 CTNNBL1Q8WYA6 563 aaPredicted RBP16.99■□□□□ 0.31
CLK3-210ENST00000563112 PSKH2Q96QS6 385 aa16.99■□□□□ 0.31
CLK3-210ENST00000563112 TSPY26PQ9H489 355 aa16.99■□□□□ 0.31
CLK3-210ENST00000563112 DEF6Q9H4E7 631 aa16.99■□□□□ 0.31
CLK3-210ENST00000563112 PCDH18Q9HCL0 1135 aa16.99■□□□□ 0.31
CLK3-210ENST00000563112 CTTNBP2NLQ9P2B4 639 aa16.99■□□□□ 0.31
CLK3-210ENST00000563112 LCMT1Q9UIC8 334 aa16.99■□□□□ 0.31
CLK3-210ENST00000563112 ATP8A1Q9Y2Q0 1164 aa16.99■□□□□ 0.31
CLK3-210ENST00000563112 PKD1L2Q7Z442 2459 aa16.99■□□□□ 0.31
CLK3-210ENST00000563112 ACACAQ13085 2346 aa16.99■□□□□ 0.31
CLK3-210ENST00000563112 ZZEF1O43149 2961 aa16.98■□□□□ 0.31
CLK3-210ENST00000563112 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.98■□□□□ 0.31
CLK3-210ENST00000563112 LZTS3O60299 673 aaPredicted RBP16.98■□□□□ 0.31
CLK3-210ENST00000563112 H2AFZP0C0S5 128 aa16.98■□□□□ 0.31
CLK3-210ENST00000563112 JUNDP17535 347 aa16.98■□□□□ 0.31
CLK3-210ENST00000563112 IGFALSP35858 605 aa16.98■□□□□ 0.31
CLK3-210ENST00000563112 DUSP3P51452 185 aaPredicted RBP16.98■□□□□ 0.31
CLK3-210ENST00000563112 CDH6P55285 790 aa16.98■□□□□ 0.31
CLK3-210ENST00000563112 SLC25A11Q02978 314 aaKnown RBP16.98■□□□□ 0.31
CLK3-210ENST00000563112 LRRC14Q15048 493 aa16.98■□□□□ 0.31
CLK3-210ENST00000563112 H2AFVQ71UI9 128 aa16.98■□□□□ 0.31
CLK3-210ENST00000563112 PROSER1Q86XN7 944 aa16.98■□□□□ 0.31
CLK3-210ENST00000563112 MARCH9Q86YJ5 346 aa16.98■□□□□ 0.31
CLK3-210ENST00000563112 ATPAF2Q8N5M1 289 aa16.98■□□□□ 0.31
CLK3-210ENST00000563112 TP53I13Q8NBR0 393 aaPredicted RBP16.98■□□□□ 0.31
CLK3-210ENST00000563112 ZNF548Q8NEK5 533 aaPredicted RBP16.98■□□□□ 0.31
CLK3-210ENST00000563112 ETNK2Q9NVF9 386 aa16.98■□□□□ 0.31
CLK3-210ENST00000563112 RCOR3Q9P2K3 495 aaPredicted RBP16.98■□□□□ 0.31
CLK3-210ENST00000563112 UVRAGQ9P2Y5 699 aa16.98■□□□□ 0.31
CLK3-210ENST00000563112 SPASTQ9UBP0 616 aa16.98■□□□□ 0.31
CLK3-210ENST00000563112 CSNK1G3Q9Y6M4 447 aa16.98■□□□□ 0.31
CLK3-210ENST00000563112 DSPP15924 2871 aaKnown RBP16.98■□□□□ 0.31
CLK3-210ENST00000563112 CFAP69A5D8W1 941 aa16.97■□□□□ 0.31
CLK3-210ENST00000563112 TMEM110-MUSTN1A8MSY1 372 aa16.97■□□□□ 0.31
CLK3-210ENST00000563112 AQP9O43315 295 aa16.97■□□□□ 0.31
CLK3-210ENST00000563112 CAPNS1P04632 268 aa16.97■□□□□ 0.31
CLK3-210ENST00000563112 C6P13671 934 aa16.97■□□□□ 0.31
CLK3-210ENST00000563112 LIG3P49916 1009 aa16.97■□□□□ 0.31
CLK3-210ENST00000563112 SLC10A7Q0GE19 358 aa16.97■□□□□ 0.31
CLK3-210ENST00000563112 SLC18A3Q16572 532 aa16.97■□□□□ 0.31
CLK3-210ENST00000563112 HES3Q5TGS1 186 aa16.97■□□□□ 0.31
CLK3-210ENST00000563112 TXNRD3NBQ6F5E7 133 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms