RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 SPATA21Q7Z572 469 aa13□□□□□ -0.33
SNX1-211ENST00000560829 CLEC14AQ86T13 490 aa13□□□□□ -0.33
SNX1-211ENST00000560829 METTL3Q86U44 580 aaKnown RBP13□□□□□ -0.33
SNX1-211ENST00000560829 DENND6AQ8IWF6 608 aa13□□□□□ -0.33
SNX1-211ENST00000560829 TRIM42Q8IWZ5 723 aa13□□□□□ -0.33
SNX1-211ENST00000560829 ANKS4BQ8N8V4 417 aa13□□□□□ -0.33
SNX1-211ENST00000560829 RIN3Q8TB24 985 aa13□□□□□ -0.33
SNX1-211ENST00000560829 RAB3IL1Q8TBN0 382 aa13□□□□□ -0.33
SNX1-211ENST00000560829 USP13Q92995 863 aaPredicted RBP13□□□□□ -0.33
SNX1-211ENST00000560829 EXOC2Q96KP1 924 aa13□□□□□ -0.33
SNX1-211ENST00000560829 SMG9Q9H0W8 520 aaKnown RBP13□□□□□ -0.33
SNX1-211ENST00000560829 MFSD1Q9H3U5 465 aa13□□□□□ -0.33
SNX1-211ENST00000560829 TDP1Q9NUW8 608 aa13□□□□□ -0.33
SNX1-211ENST00000560829 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13□□□□□ -0.335e-12■■■■■ 28.5
SNX1-211ENST00000560829 FBXO5Q9UKT4 447 aa13□□□□□ -0.33
SNX1-211ENST00000560829 EMCNQ9ULC0 261 aa13□□□□□ -0.33
SNX1-211ENST00000560829 PHTF1Q9UMS5 762 aa13□□□□□ -0.33
SNX1-211ENST00000560829 HCFC2Q9Y5Z7 792 aa13□□□□□ -0.33
SNX1-211ENST00000560829 PLIN3O60664 434 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 PENKP01210 267 aaPredicted RBP12.99□□□□□ -0.33
SNX1-211ENST00000560829 ILF2Q12905 390 aaKnown RBP12.99□□□□□ -0.33
SNX1-211ENST00000560829 LMAN2Q12907 356 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 USP4Q13107 963 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 GPM6BQ13491 265 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 GALNT3Q14435 633 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 GRM3Q14832 879 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 PLEKHG6Q3KR16 790 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 ELMSAN1Q6PJG2 1045 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 FAM47EQ6ZV65 393 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 CMC1Q7Z7K0 106 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 LCA5Q86VQ0 697 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 APCDD1Q8J025 514 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 ARMC2Q8NEN0 867 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 SLCO1B3Q9NPD5 702 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 CLEC4EQ9ULY5 219 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 CHKBQ9Y259 395 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 RAI2Q9Y5P3 530 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 WDR91A4D1P6 747 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 ZNF197O14709 1029 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 GSRP00390 522 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 PRKCGP05129 697 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 C2P06681 752 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 BPGMP07738 259 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 LEPRP48357 1165 aaKnown RBP12.99□□□□□ -0.33
SNX1-211ENST00000560829 CD151P48509 253 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 CSNK1DP48730 415 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 RHOAP61586 193 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 AP1S1P61966 158 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 SLC20A2Q08357 652 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 CTBP1Q13363 440 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 ZNF77Q15935 545 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 PPM1JQ5JR12 505 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 ZNF470Q6ECI4 717 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 TPGS1Q6ZTW0 290 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 TTC16Q8NEE8 873 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 ACVR1CQ8NER5 493 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 STYXQ8WUJ0 223 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 ATXN7L3BQ96GX2 97 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 PLCD4Q9BRC7 762 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 ABCB8Q9NUT2 735 aa12.99□□□□□ -0.33
SNX1-211ENST00000560829 A0A096LPK6 155 aa12.98□□□□□ -0.33
SNX1-211ENST00000560829 FZD6O60353 706 aa12.98□□□□□ -0.33
SNX1-211ENST00000560829 PRAMEF12O95522 483 aa12.98□□□□□ -0.33
SNX1-211ENST00000560829 CRTAMO95727 393 aa12.98□□□□□ -0.33
SNX1-211ENST00000560829 TOP3BO95985 862 aaKnown RBP12.98□□□□□ -0.33
SNX1-211ENST00000560829 F7P08709 466 aaPredicted RBP12.98□□□□□ -0.33
SNX1-211ENST00000560829 ABCG1P45844 678 aa12.98□□□□□ -0.33
SNX1-211ENST00000560829 ARSDP51689 593 aa12.98□□□□□ -0.33
SNX1-211ENST00000560829 NTHL1P78549 312 aa12.98□□□□□ -0.33
SNX1-211ENST00000560829 MPP1Q00013 466 aa12.98□□□□□ -0.33
SNX1-211ENST00000560829 SHHQ15465 462 aa12.98□□□□□ -0.33
SNX1-211ENST00000560829 CCDC153Q494R4 210 aa12.98□□□□□ -0.33
SNX1-211ENST00000560829 N4BP2L1Q5TBK1 243 aaPredicted RBP12.98□□□□□ -0.33
SNX1-211ENST00000560829 OTOAQ7RTW8 1153 aa12.98□□□□□ -0.33
SNX1-211ENST00000560829 GRASPQ7Z6J2 395 aaPredicted RBP12.98□□□□□ -0.33
SNX1-211ENST00000560829 KIAA1958Q8N8K9 716 aa12.98□□□□□ -0.33
SNX1-211ENST00000560829 ZNF557Q8N988 423 aaPredicted RBP12.98□□□□□ -0.33
SNX1-211ENST00000560829 GPR150Q8NGU9 434 aa12.98□□□□□ -0.33
SNX1-211ENST00000560829 BLOC1S5Q8TDH9 187 aa12.98□□□□□ -0.33
SNX1-211ENST00000560829 BHMTQ93088 406 aa12.98□□□□□ -0.33
SNX1-211ENST00000560829 OTUB2Q96DC9 234 aa12.98□□□□□ -0.33
SNX1-211ENST00000560829 ADGRE3Q9BY15 652 aa12.98□□□□□ -0.33
SNX1-211ENST00000560829 PLK2Q9NYY3 685 aa12.98□□□□□ -0.33
SNX1-211ENST00000560829 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.98□□□□□ -0.33
SNX1-211ENST00000560829 TBC1D14Q9P2M4 693 aa12.98□□□□□ -0.33
SNX1-211ENST00000560829 INTS6Q9UL03 887 aaKnown RBP12.98□□□□□ -0.33
SNX1-211ENST00000560829 ANKRD6Q9Y2G4 727 aa12.98□□□□□ -0.33
SNX1-211ENST00000560829 ARL2BPQ9Y2Y0 163 aa12.98□□□□□ -0.33
SNX1-211ENST00000560829 FCF1Q9Y324 198 aaKnown RBP12.98□□□□□ -0.33
SNX1-211ENST00000560829 CCDC195A0A1B0GUA6 201 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 PER2O15055 1255 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 RPP40O75818 363 aaKnown RBP12.97□□□□□ -0.33
SNX1-211ENST00000560829 MT-CO1P00395 513 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 PROCP04070 461 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 PDHA1P08559 390 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 BGNP21810 368 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 WEE1P30291 646 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 CD70P32970 193 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 MAPK8P45983 427 aa12.97□□□□□ -0.33
SNX1-211ENST00000560829 ZNF140P52738 457 aaPredicted RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms