RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 CEP250Q9BV73 2442 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 A0A1W2PP55 124 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 EPOPA6NHQ4 379 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 BTNL10A8MVZ5 291 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 CDH16O75309 829 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 KLF8O95600 359 aaPredicted RBP5.49□□□□□ -1.53
VPS13C-209ENST00000560637 HMGA1P17096 107 aaKnown RBP5.49□□□□□ -1.53
VPS13C-209ENST00000560637 MSH3P20585 1137 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 MAP4P27816 1152 aaKnown RBP5.49□□□□□ -1.53
VPS13C-209ENST00000560637 ALDH3A1P30838 453 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 PTPN7P35236 360 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 SPRP35270 261 aaPredicted RBP5.49□□□□□ -1.53
VPS13C-209ENST00000560637 GABRB2P47870 512 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 LIG3P49916 1009 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 YBEYP58557 167 aaPredicted RBP5.49□□□□□ -1.53
VPS13C-209ENST00000560637 IL9RQ01113 521 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 PARP15Q460N3 678 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 TRMT10BQ6PF06 316 aaKnown RBP5.49□□□□□ -1.53
VPS13C-209ENST00000560637 ZCCHC23Q6ZST2 131 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 CHST14Q8NCH0 376 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 CXorf38Q8TB03 319 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 ADAMTS19Q8TE59 1207 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 FAXDC2Q96IV6 333 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 SLC2A13Q96QE2 648 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 ELAC2Q9BQ52 826 aaKnown RBP5.49□□□□□ -1.53
VPS13C-209ENST00000560637 YIPF2Q9BWQ6 316 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 MAGEH1Q9H213 219 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 PABPC3Q9H361 631 aaKnown RBP5.49□□□□□ -1.53
VPS13C-209ENST00000560637 PNPLA8Q9NP80 782 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 FZD3Q9NPG1 666 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 CYLDQ9NQC7 956 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 ELOVL2Q9NXB9 296 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 FBXL12Q9NXK8 326 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 OGFRQ9NZT2 677 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 STK39Q9UEW8 545 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 FKBPLQ9UIM3 349 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 ITM2BQ9Y287 266 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 NUP205Q92621 2012 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 HEATR9A2RTY3 570 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 MEI4A8MW99 385 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 HACD1B0YJ81 288 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 MATN3O15232 486 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 INSIG1O15503 277 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 DIAPH2O60879 1101 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 MMP20O60882 483 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 TTC4O95801 387 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 ITGAVP06756 1048 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 HNRNPA1P09651 372 aaKnown RBP eCLIP5.49□□□□□ -1.53
VPS13C-209ENST00000560637 HIST1H2AGP0C0S8 130 aaPredicted RBP5.49□□□□□ -1.53
VPS13C-209ENST00000560637 HIST1H2ADP20671 130 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 MC4RP32245 332 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 CLCN4P51793 760 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 POLR2LP62875 67 aaKnown RBP5.49□□□□□ -1.53
VPS13C-209ENST00000560637 UBE3AQ05086 875 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 PTK6Q13882 451 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 ZNF460Q14592 562 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 SNAP47Q5SQN1 464 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 DPY19L2P1Q6NXN4 242 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 CD300LGQ6UXG3 332 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 DENND6AQ8IWF6 608 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 DDIASQ8IXT1 998 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 CLDN19Q8N6F1 224 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 EFCAB3Q8N7B9 438 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 UBR7Q8N806 425 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 TSTD1Q8NFU3 115 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 OR52K2Q8NGK3 314 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 WFDC5Q8TCV5 224 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 SCAMP4Q969E2 229 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 HIST1H2AHQ96KK5 128 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 HIST1H2AJQ99878 128 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 P2RY13Q9BPV8 354 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 FEM1AQ9BSK4 669 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 H2AFJQ9BTM1 129 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 SLC6A17Q9H1V8 727 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 ZFYVE1Q9HBF4 777 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 CALCOCO1Q9P1Z2 691 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 PSMC3IPQ9P2W1 217 aaPredicted RBP5.49□□□□□ -1.53
VPS13C-209ENST00000560637 SLC2A6Q9UGQ3 507 aa5.49□□□□□ -1.53
VPS13C-209ENST00000560637 APC2O95996 2303 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 TMEM120BA0PK00 339 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 GPR39O43194 453 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 PSMD3O43242 534 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 KATNA1O75449 491 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 SKAP2O75563 359 aaPredicted RBP5.48□□□□□ -1.53
VPS13C-209ENST00000560637 SUPT7LO94864 414 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 CLDN7O95471 211 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 FGF19O95750 216 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 CFIP05156 583 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 PDHA1P08559 390 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 SNRPAP09012 282 aaKnown RBP5.48□□□□□ -1.53
VPS13C-209ENST00000560637 CTSEP14091 401 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 NMBRP28336 390 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 HNF4AP41235 474 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 PPP3CCP48454 512 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 SEC24CP53992 1094 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 MPP1Q00013 466 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 BTKQ06187 659 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 ASPHQ12797 758 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 PRKG2Q13237 762 aa5.48□□□□□ -1.53
VPS13C-209ENST00000560637 STAT4Q14765 748 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms