RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 HNRNPH2P55795 449 aaKnown RBP12.78□□□□□ -0.36
USP3-213ENST00000559711 GALNT3Q14435 633 aa12.78□□□□□ -0.36
USP3-213ENST00000559711 DUSP6Q16828 381 aa12.78□□□□□ -0.36
USP3-213ENST00000559711 METTL3Q86U44 580 aaKnown RBP12.78□□□□□ -0.36
USP3-213ENST00000559711 TMEM25Q86YD3 366 aa12.78□□□□□ -0.36
USP3-213ENST00000559711 KIAA1958Q8N8K9 716 aa12.78□□□□□ -0.36
USP3-213ENST00000559711 CALML6Q8TD86 181 aa12.78□□□□□ -0.36
USP3-213ENST00000559711 LRRC8CQ8TDW0 803 aa12.78□□□□□ -0.36
USP3-213ENST00000559711 SPOCK2Q92563 424 aa12.78□□□□□ -0.36
USP3-213ENST00000559711 ZNF75CPQ92670 426 aaPredicted RBP12.78□□□□□ -0.36
USP3-213ENST00000559711 PTPRN2Q92932 1015 aa12.78□□□□□ -0.36
USP3-213ENST00000559711 IRF7Q92985 503 aa12.78□□□□□ -0.36
USP3-213ENST00000559711 OTUB2Q96DC9 234 aa12.78□□□□□ -0.36
USP3-213ENST00000559711 VPS39Q96JC1 886 aa12.78□□□□□ -0.36
USP3-213ENST00000559711 GPR22Q99680 433 aa12.78□□□□□ -0.36
USP3-213ENST00000559711 PBX4Q9BYU1 374 aa12.78□□□□□ -0.36
USP3-213ENST00000559711 SNX15Q9NRS6 342 aa12.78□□□□□ -0.36
USP3-213ENST00000559711 FGFR1OP2Q9NVK5 253 aa12.78□□□□□ -0.36
USP3-213ENST00000559711 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.78□□□□□ -0.362e-6■■■■■ 41.4
USP3-213ENST00000559711 DCDC2Q9UHG0 476 aa12.78□□□□□ -0.36
USP3-213ENST00000559711 INTS6Q9UL03 887 aaKnown RBP12.78□□□□□ -0.36
USP3-213ENST00000559711 CHKBQ9Y259 395 aa12.78□□□□□ -0.36
USP3-213ENST00000559711 MRPS23Q9Y3D9 190 aaKnown RBP12.78□□□□□ -0.36
USP3-213ENST00000559711 PSMA3P25788 255 aa12.77□□□□□ -0.36
USP3-213ENST00000559711 SERPINB4P48594 390 aa12.77□□□□□ -0.36
USP3-213ENST00000559711 CSNK1DP48730 415 aa12.77□□□□□ -0.36
USP3-213ENST00000559711 RHOAP61586 193 aa12.77□□□□□ -0.36
USP3-213ENST00000559711 KCNC3Q14003 757 aa12.77□□□□□ -0.36
USP3-213ENST00000559711 KYAT3Q6YP21 454 aaKnown RBP12.77□□□□□ -0.36
USP3-213ENST00000559711 GALNT7Q86SF2 657 aa12.77□□□□□ -0.36
USP3-213ENST00000559711 SRLQ86TD4 932 aa12.77□□□□□ -0.36
USP3-213ENST00000559711 SPATS2Q86XZ4 545 aaKnown RBP12.77□□□□□ -0.36
USP3-213ENST00000559711 RNF135Q8IUD6 432 aa12.77□□□□□ -0.36
USP3-213ENST00000559711 ARID3BQ8IVW6 561 aaPredicted RBP12.77□□□□□ -0.36
USP3-213ENST00000559711 DENND6AQ8IWF6 608 aa12.77□□□□□ -0.36
USP3-213ENST00000559711 LMNTD2Q8IXW0 634 aa12.77□□□□□ -0.36
USP3-213ENST00000559711 GABPB2Q8TAK5 448 aaPredicted RBP12.77□□□□□ -0.36
USP3-213ENST00000559711 CABS1Q96KC9 395 aa12.77□□□□□ -0.36
USP3-213ENST00000559711 LINC00597Q9H2U6 94 aa12.77□□□□□ -0.36
USP3-213ENST00000559711 MFSD1Q9H3U5 465 aa12.77□□□□□ -0.36
USP3-213ENST00000559711 CERS4Q9HA82 394 aa12.77□□□□□ -0.36
USP3-213ENST00000559711 SPHK2Q9NRA0 654 aa12.77□□□□□ -0.36
USP3-213ENST00000559711 GGT7Q9UJ14 662 aa12.77□□□□□ -0.36
USP3-213ENST00000559711 FBXO5Q9UKT4 447 aa12.77□□□□□ -0.36
USP3-213ENST00000559711 FCF1Q9Y324 198 aaKnown RBP12.77□□□□□ -0.36
USP3-213ENST00000559711 PCDHGC4Q9Y5F7 938 aa12.77□□□□□ -0.36
USP3-213ENST00000559711 MYO7AQ13402 2215 aa12.77□□□□□ -0.36
USP3-213ENST00000559711 MTCL1Q9Y4B5 1905 aaKnown RBP12.77□□□□□ -0.37
USP3-213ENST00000559711 DENND4CQ5VZ89 1909 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.77□□□□□ -0.37
USP3-213ENST00000559711 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.77□□□□□ -0.37
USP3-213ENST00000559711 K7ERQ8 282 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 SMAD6O43541 496 aaKnown RBP12.77□□□□□ -0.37
USP3-213ENST00000559711 FZD6O60353 706 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 SNX3O60493 162 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 GLRA3O75311 464 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 MPOP05164 745 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 PDHA1P08559 390 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 HLA-FP30511 346 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 SLC1A2P43004 574 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 ARSDP51689 593 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 AP1S1P61966 158 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 TRAF2Q12933 501 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 CTBP1Q13363 440 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 PITRM1Q5JRX3 1037 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 ADGRG2Q8IZP9 1017 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 CACNA2D3Q8IZS8 1091 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 ZNF557Q8N988 423 aaPredicted RBP12.77□□□□□ -0.37
USP3-213ENST00000559711 ITFG1Q8TB96 612 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 BLOC1S5Q8TDH9 187 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 STYXQ8WUJ0 223 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 SMG7Q92540 1137 aaKnown RBP12.77□□□□□ -0.37
USP3-213ENST00000559711 HDAC10Q969S8 669 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 GRAMD1AQ96CP6 724 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 ELAC2Q9BQ52 826 aaKnown RBP12.77□□□□□ -0.37
USP3-213ENST00000559711 ADGRE3Q9BY15 652 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 PITPNM3Q9BZ71 974 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 MARK1Q9P0L2 795 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 KCTD3Q9Y597 815 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 ARL5AQ9Y689 179 aa12.77□□□□□ -0.37
USP3-213ENST00000559711 ANKRD66B4E2M5 251 aa12.76□□□□□ -0.37
USP3-213ENST00000559711 ZNF821O75541 412 aaPredicted RBP12.76□□□□□ -0.37
USP3-213ENST00000559711 CRTAMO95727 393 aa12.76□□□□□ -0.37
USP3-213ENST00000559711 GSTA1P08263 222 aa12.76□□□□□ -0.37
USP3-213ENST00000559711 F7P08709 466 aaPredicted RBP12.76□□□□□ -0.37
USP3-213ENST00000559711 LEPRP48357 1165 aaKnown RBP12.76□□□□□ -0.37
USP3-213ENST00000559711 CD151P48509 253 aa12.76□□□□□ -0.37
USP3-213ENST00000559711 NRIP1P48552 1158 aa12.76□□□□□ -0.37
USP3-213ENST00000559711 MPP1Q00013 466 aa12.76□□□□□ -0.37
USP3-213ENST00000559711 CBX2Q14781 532 aaPredicted RBP12.76□□□□□ -0.37
USP3-213ENST00000559711 GRM3Q14832 879 aa12.76□□□□□ -0.37
USP3-213ENST00000559711 PPM1JQ5JR12 505 aa12.76□□□□□ -0.37
USP3-213ENST00000559711 ZNF470Q6ECI4 717 aa12.76□□□□□ -0.37
USP3-213ENST00000559711 C6orf89Q6UWU4 347 aa12.76□□□□□ -0.37
USP3-213ENST00000559711 CMC1Q7Z7K0 106 aa12.76□□□□□ -0.37
USP3-213ENST00000559711 CLEC14AQ86T13 490 aa12.76□□□□□ -0.37
USP3-213ENST00000559711 C12orf76Q8N812 135 aaPredicted RBP12.76□□□□□ -0.37
USP3-213ENST00000559711 CCDC197Q8NCU1 140 aa12.76□□□□□ -0.37
USP3-213ENST00000559711 ARMC2Q8NEN0 867 aa12.76□□□□□ -0.37
USP3-213ENST00000559711 ACVR1CQ8NER5 493 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms