RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 PMS2P1A4D2B8 440 aa13.24□□□□□ -0.29
TPM1-220ENST00000559556 NTN3O00634 580 aaPredicted RBP13.24□□□□□ -0.29
TPM1-220ENST00000559556 CASC3O15234 703 aaKnown RBP13.24□□□□□ -0.29
TPM1-220ENST00000559556 BUB1O43683 1085 aa13.24□□□□□ -0.29
TPM1-220ENST00000559556 MMP20O60882 483 aa13.24□□□□□ -0.29
TPM1-220ENST00000559556 UNGP13051 313 aaPredicted RBP13.24□□□□□ -0.29
TPM1-220ENST00000559556 TSHRP16473 764 aa13.24□□□□□ -0.29
TPM1-220ENST00000559556 RFC1P35251 1148 aaPredicted RBP13.24□□□□□ -0.29
TPM1-220ENST00000559556 SOX5P35711 763 aa13.24□□□□□ -0.29
TPM1-220ENST00000559556 EIF4A3P38919 411 aaKnown RBP13.24□□□□□ -0.29
TPM1-220ENST00000559556 PEX5P50542 639 aa13.24□□□□□ -0.29
TPM1-220ENST00000559556 SUOXP51687 545 aa13.24□□□□□ -0.29
TPM1-220ENST00000559556 PPARDQ03181 441 aa13.24□□□□□ -0.29
TPM1-220ENST00000559556 ELP6Q0PNE2 266 aa13.24□□□□□ -0.29
TPM1-220ENST00000559556 C1orf61Q13536 156 aa13.24□□□□□ -0.29
TPM1-220ENST00000559556 SPIDRQ14159 915 aa13.24□□□□□ -0.29
TPM1-220ENST00000559556 IRF4Q15306 451 aa13.24□□□□□ -0.29
TPM1-220ENST00000559556 KLHL40Q2TBA0 621 aa13.24□□□□□ -0.29
TPM1-220ENST00000559556 CT47A1Q5JQC4 288 aaPredicted RBP13.24□□□□□ -0.29
TPM1-220ENST00000559556 FAXCQ5TGI0 409 aa13.24□□□□□ -0.29
TPM1-220ENST00000559556 FSTL5Q8N475 847 aaPredicted RBP13.24□□□□□ -0.29
TPM1-220ENST00000559556 ARL14Q8N4G2 192 aa13.24□□□□□ -0.29
TPM1-220ENST00000559556 C3orf20Q8ND61 904 aa13.24□□□□□ -0.29
TPM1-220ENST00000559556 CCDC3Q9BQI4 270 aa13.24□□□□□ -0.29
TPM1-220ENST00000559556 WRAP53Q9BUR4 548 aaKnown RBP13.24□□□□□ -0.29
TPM1-220ENST00000559556 CPEB1Q9BZB8 566 aaKnown RBP13.24□□□□□ -0.29
TPM1-220ENST00000559556 KLC2Q9H0B6 622 aa13.24□□□□□ -0.29
TPM1-220ENST00000559556 LHX3Q9UBR4 397 aa13.24□□□□□ -0.29
TPM1-220ENST00000559556 PADI4Q9UM07 663 aa13.24□□□□□ -0.29
TPM1-220ENST00000559556 DAAM1Q9Y4D1 1078 aa13.24□□□□□ -0.29
TPM1-220ENST00000559556 TSPAN11A1L157 253 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 K7ENP7 123 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 YY2O15391 372 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 CELA2BP08218 269 aaPredicted RBP13.23□□□□□ -0.29
TPM1-220ENST00000559556 ITGA2BP08514 1039 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 ALPIP09923 528 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 KRT3P12035 628 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 TIMP2P16035 220 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 KLK7P49862 253 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 BLKP51451 505 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 HK3P52790 923 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 YBEYP58557 167 aaPredicted RBP13.23□□□□□ -0.29
TPM1-220ENST00000559556 POLR2FP61218 127 aaKnown RBP13.23□□□□□ -0.29
TPM1-220ENST00000559556 RHOAP61586 193 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 SERINC3Q13530 473 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 AGERQ15109 404 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 PARP15Q460N3 678 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 TMEM52BQ4KMG9 183 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 CDKAL1Q5VV42 579 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 ESRP1Q6NXG1 681 aaKnown RBP13.23□□□□□ -0.29
TPM1-220ENST00000559556 INO80CQ6PI98 192 aaPredicted RBP13.23□□□□□ -0.29
TPM1-220ENST00000559556 LVRNQ6Q4G3 990 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 SLFN11Q7Z7L1 901 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 PHLDB2Q86SQ0 1253 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 ZNF354CQ86Y25 554 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 PYROXD2Q8N2H3 581 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 SDR16C5Q8N3Y7 309 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 ARL10Q8N8L6 244 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 KYQ8NBH2 561 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 PCDH19Q8TAB3 1148 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 HMCESQ96FZ2 354 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 SEMA4CQ9C0C4 833 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 TAB2Q9NYJ8 693 aa13.23□□□□□ -0.29
TPM1-220ENST00000559556 SPTAN1Q13813 2472 aaKnown RBP13.23□□□□□ -0.29
TPM1-220ENST00000559556 SPTBN1Q01082 2364 aaKnown RBP13.22□□□□□ -0.29
TPM1-220ENST00000559556 TMEM110-MUSTN1A8MSY1 372 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 WASH4PA8MWX3 477 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 RASA4BC9J798 803 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 D6RAR5 112 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 EPHB6O15197 1021 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 INSIG1O15503 277 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 RASA4O43374 803 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 CALB1P05937 261 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 ITIH2P19823 946 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 GPD1P21695 349 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 EPHB2P29323 1055 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 MMP12P39900 470 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 NSFP46459 744 aaKnown RBP13.22□□□□□ -0.29
TPM1-220ENST00000559556 AIF1P55008 147 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 CLN3Q13286 438 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 GRM3Q14832 879 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 LRRC14Q15048 493 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 ELOCQ15369 112 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 CLEC16AQ2KHT3 1053 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 ALG11Q2TAA5 492 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 EFHC2Q5JST6 749 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 WDR59Q6PJI9 974 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 MON1BQ7L1V2 547 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 DNAAF5Q86Y56 855 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 PHF13Q86YI8 300 aaPredicted RBP13.22□□□□□ -0.29
TPM1-220ENST00000559556 UMODL1-AS1Q8N2C9 162 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 HCAR2Q8TDS4 363 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 EXOC2Q96KP1 924 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 PCDHB18PQ96TA0 734 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.22□□□□□ -0.29
TPM1-220ENST00000559556 SELENOOQ9BVL4 669 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 NUP62CLQ9H1M0 184 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 NLRC4Q9NPP4 1024 aa13.22□□□□□ -0.29
TPM1-220ENST00000559556 FAM207AQ9NSI2 230 aaPredicted RBP13.22□□□□□ -0.29
TPM1-220ENST00000559556 ADAM22Q9P0K1 906 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms