RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 TCOF1Q13428 1488 aaKnown RBP8.81□□□□□ -1
YBX3-208ENST00000540447 A0A0B4J269 797 aa8.81□□□□□ -1
YBX3-208ENST00000540447 IQCMA0A1B0GVH7 501 aa8.81□□□□□ -1
YBX3-208ENST00000540447 MGAT4DA6NG13 374 aa8.81□□□□□ -1
YBX3-208ENST00000540447 MUSKO15146 869 aa8.81□□□□□ -1
YBX3-208ENST00000540447 RNASEH1O60930 286 aaKnown RBP8.81□□□□□ -1
YBX3-208ENST00000540447 FTH1P02794 183 aa8.81□□□□□ -1
YBX3-208ENST00000540447 SPARCP09486 303 aa8.81□□□□□ -1
YBX3-208ENST00000540447 CD79BP40259 229 aa8.81□□□□□ -1
YBX3-208ENST00000540447 MCAMP43121 646 aa8.81□□□□□ -1
YBX3-208ENST00000540447 GRIA4P48058 902 aa8.81□□□□□ -1
YBX3-208ENST00000540447 TUBB3Q13509 450 aa8.81□□□□□ -1
YBX3-208ENST00000540447 VEPH1Q14D04 833 aa8.81□□□□□ -1
YBX3-208ENST00000540447 PDK2Q15119 407 aa8.81□□□□□ -1
YBX3-208ENST00000540447 FAM187BQ17R55 369 aa8.81□□□□□ -1
YBX3-208ENST00000540447 ZNF366Q8N895 744 aa8.81□□□□□ -1
YBX3-208ENST00000540447 C10orf82Q8WW14 230 aa8.81□□□□□ -1
YBX3-208ENST00000540447 CDK5RAP1Q96SZ6 601 aaKnown RBP8.81□□□□□ -1
YBX3-208ENST00000540447 ACOX2Q99424 681 aa8.81□□□□□ -1
YBX3-208ENST00000540447 MTMR12Q9C0I1 747 aa8.81□□□□□ -1
YBX3-208ENST00000540447 TP63Q9H3D4 680 aaPredicted RBP8.81□□□□□ -1
YBX3-208ENST00000540447 DNAJC28Q9NX36 388 aa8.81□□□□□ -1
YBX3-208ENST00000540447 MALT1Q9UDY8 824 aa8.81□□□□□ -1
YBX3-208ENST00000540447 TEX46H3BTG2 121 aa8.81□□□□□ -1
YBX3-208ENST00000540447 SERPIND1P05546 499 aa8.81□□□□□ -1
YBX3-208ENST00000540447 ACADLP28330 430 aa8.81□□□□□ -1
YBX3-208ENST00000540447 LCN1P31025 176 aa8.81□□□□□ -1
YBX3-208ENST00000540447 IFNGR2P38484 337 aa8.81□□□□□ -1
YBX3-208ENST00000540447 RBBP4Q09028 425 aa8.81□□□□□ -1
YBX3-208ENST00000540447 CLVS2Q5SYC1 327 aa8.81□□□□□ -1
YBX3-208ENST00000540447 TMEM139Q8IV31 216 aa8.81□□□□□ -1
YBX3-208ENST00000540447 EFHBQ8N7U6 833 aa8.81□□□□□ -1
YBX3-208ENST00000540447 IGDCC4Q8TDY8 1250 aa8.81□□□□□ -1
YBX3-208ENST00000540447 PPP1R14AQ96A00 147 aa8.81□□□□□ -1
YBX3-208ENST00000540447 LURAP1Q96LR2 239 aa8.81□□□□□ -1
YBX3-208ENST00000540447 TMEM47Q9BQJ4 181 aa8.81□□□□□ -1
YBX3-208ENST00000540447 TCEAL7Q9BRU2 100 aa8.81□□□□□ -1
YBX3-208ENST00000540447 COPZ2Q9P299 210 aa8.81□□□□□ -1
YBX3-208ENST00000540447 IFT80Q9P2H3 777 aaPredicted RBP8.81□□□□□ -1
YBX3-208ENST00000540447 SEC14L4Q9UDX3 406 aa8.81□□□□□ -1
YBX3-208ENST00000540447 AXIN2Q9Y2T1 843 aa8.81□□□□□ -1
YBX3-208ENST00000540447 ERI2A8K979 691 aaKnown RBP8.81□□□□□ -1
YBX3-208ENST00000540447 USP17L5A8MUK1 530 aa8.81□□□□□ -1
YBX3-208ENST00000540447 ZSCAN5DPP0CG00 497 aa8.81□□□□□ -1
YBX3-208ENST00000540447 NOS3P29474 1203 aa8.81□□□□□ -1
YBX3-208ENST00000540447 NR4A2P43354 598 aa8.81□□□□□ -1
YBX3-208ENST00000540447 MAN2A2P49641 1150 aa8.81□□□□□ -1
YBX3-208ENST00000540447 PRMT2P55345 433 aa8.81□□□□□ -1
YBX3-208ENST00000540447 DCAF4L1Q3SXM0 396 aa8.81□□□□□ -1
YBX3-208ENST00000540447 GK5Q6ZS86 529 aa8.81□□□□□ -1
YBX3-208ENST00000540447 ZC3H7AQ8IWR0 971 aaKnown RBP8.81□□□□□ -1
YBX3-208ENST00000540447 PRELID2Q8N945 189 aa8.81□□□□□ -1
YBX3-208ENST00000540447 RIT2Q99578 217 aa8.81□□□□□ -1
YBX3-208ENST00000540447 LPIN3Q9BQK8 851 aa8.81□□□□□ -1
YBX3-208ENST00000540447 BHLHE41Q9C0J9 482 aaPredicted RBP8.81□□□□□ -1
YBX3-208ENST00000540447 SNTG1Q9NSN8 517 aa8.81□□□□□ -1
YBX3-208ENST00000540447 ZNF225Q9UK10 706 aa8.81□□□□□ -1
YBX3-208ENST00000540447 PADI4Q9UM07 663 aa8.81□□□□□ -1
YBX3-208ENST00000540447 CFL2Q9Y281 166 aa8.81□□□□□ -1
YBX3-208ENST00000540447 RPTORQ8N122 1335 aa8.8□□□□□ -1
YBX3-208ENST00000540447 ANKARQ7Z5J8 1434 aa8.8□□□□□ -1
YBX3-208ENST00000540447 C1orf196B1AJZ1 125 aa8.8□□□□□ -1
YBX3-208ENST00000540447 HLA-DRAP01903 254 aa8.8□□□□□ -1
YBX3-208ENST00000540447 BPGMP07738 259 aa8.8□□□□□ -1
YBX3-208ENST00000540447 C14orf80Q86SX3 495 aa8.8□□□□□ -1
YBX3-208ENST00000540447 TRIM48Q8IWZ4 208 aa8.8□□□□□ -1
YBX3-208ENST00000540447 FAM109AQ8N4B1 249 aa8.8□□□□□ -1
YBX3-208ENST00000540447 TCEAL4Q96EI5 215 aa8.8□□□□□ -1
YBX3-208ENST00000540447 ATP13A3Q9H7F0 1226 aa8.8□□□□□ -1
YBX3-208ENST00000540447 ZNF334Q9HCZ1 680 aaPredicted RBP8.8□□□□□ -1
YBX3-208ENST00000540447 TMEM216Q9P0N5 145 aa8.8□□□□□ -1
YBX3-208ENST00000540447 U3KQV3 271 aa8.8□□□□□ -1
YBX3-208ENST00000540447 BBIP1A8MTZ0 92 aa8.8□□□□□ -1
YBX3-208ENST00000540447 BTNL10A8MVZ5 291 aa8.8□□□□□ -1
YBX3-208ENST00000540447 REM1O75628 298 aa8.8□□□□□ -1
YBX3-208ENST00000540447 CCNG1P51959 295 aa8.8□□□□□ -1
YBX3-208ENST00000540447 ARFIP1P53367 373 aa8.8□□□□□ -1
YBX3-208ENST00000540447 ZNF549Q6P9A3 640 aa8.8□□□□□ -1
YBX3-208ENST00000540447 KCNMB4Q86W47 210 aa8.8□□□□□ -1
YBX3-208ENST00000540447 C10orf107Q8IVU9 208 aa8.8□□□□□ -1
YBX3-208ENST00000540447 SPARTQ8N0X7 666 aa8.8□□□□□ -1
YBX3-208ENST00000540447 ZNF557Q8N988 423 aaPredicted RBP8.8□□□□□ -1
YBX3-208ENST00000540447 ATL1Q8WXF7 558 aa8.8□□□□□ -1
YBX3-208ENST00000540447 PWWP2AQ96N64 755 aa8.8□□□□□ -1
YBX3-208ENST00000540447 PI4K2AQ9BTU6 479 aa8.8□□□□□ -1
YBX3-208ENST00000540447 RANBP3Q9H6Z4 567 aaPredicted RBP8.8□□□□□ -1
YBX3-208ENST00000540447 PAK6Q9NQU5 681 aaPredicted RBP8.8□□□□□ -1
YBX3-208ENST00000540447 CLCA1A8K7I4 914 aa8.8□□□□□ -1
YBX3-208ENST00000540447 ATP6V1G2-DDX39BF2Z307 99 aa8.8□□□□□ -1
YBX3-208ENST00000540447 NUAK1O60285 661 aa8.8□□□□□ -1
YBX3-208ENST00000540447 GMDSO60547 372 aa8.8□□□□□ -1
YBX3-208ENST00000540447 UMPSP11172 480 aa8.8□□□□□ -1
YBX3-208ENST00000540447 PEPDP12955 493 aa8.8□□□□□ -1
YBX3-208ENST00000540447 FUT4P22083 530 aa8.8□□□□□ -1
YBX3-208ENST00000540447 S100A3P33764 101 aa8.8□□□□□ -1
YBX3-208ENST00000540447 C1QBPQ07021 282 aaKnown RBP8.8□□□□□ -1
YBX3-208ENST00000540447 STILQ15468 1287 aa8.8□□□□□ -1
YBX3-208ENST00000540447 WDR72Q3MJ13 1102 aa8.8□□□□□ -1
YBX3-208ENST00000540447 ZNF404Q494X3 552 aa8.8□□□□□ -1
YBX3-208ENST00000540447 LRRN1Q6UXK5 716 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms