RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 TNFRSF10BO14763 440 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 MUSKO15146 869 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 VNN2O95498 520 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 CYP1A2P05177 515 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 GLI1P08151 1106 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 ERVK-10P10266 1014 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 GPS2Q13227 327 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 MRPL58Q14197 206 aaKnown RBP7.3□□□□□ -1.24
MSH6-209ENST00000538136 HIF1AQ16665 826 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 FASTKD1Q53R41 847 aaKnown RBP7.3□□□□□ -1.24
MSH6-209ENST00000538136 TTC23LQ6PF05 361 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 POLNQ7Z5Q5 900 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 ADHFE1Q8IWW8 467 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 NRSN1Q8IZ57 195 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 HDAC10Q969S8 669 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 CYLDQ9NQC7 956 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 C2orf42Q9NWW7 574 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 DMGDHQ9UI17 866 aaKnown RBP7.3□□□□□ -1.24
MSH6-209ENST00000538136 TLK1Q9UKI8 766 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 TPX2Q9ULW0 747 aaKnown RBP7.3□□□□□ -1.24
MSH6-209ENST00000538136 FZD10Q9ULW2 581 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 NEU2Q9Y3R4 380 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 ERI2A8K979 691 aaKnown RBP7.3□□□□□ -1.24
MSH6-209ENST00000538136 MAN2B1O00754 1011 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 PAX3P23760 479 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 SSTR1P30872 391 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 ATP1A2P50993 1020 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 CDK18Q07002 472 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 CNTN1Q12860 1018 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 TRIM61Q5EBN2 209 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 EOGTQ5NDL2 527 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 USP45Q70EL2 814 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 FRA10AC1Q70Z53 315 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 TSPAN33Q86UF1 283 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 LMNTD1Q8N9Z9 388 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 LRRN4CLQ8ND94 238 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 OR13C4Q8NGS5 318 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 EXD1Q8NHP7 514 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 LMX1AQ8TE12 382 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 STK32AQ8WU08 396 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 TBATAQ96M53 351 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 FMO2Q99518 471 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 KLF16Q9BXK1 252 aaPredicted RBP7.3□□□□□ -1.24
MSH6-209ENST00000538136 ARRDC1-AS1Q9H2J1 176 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.3□□□□□ -1.24
MSH6-209ENST00000538136 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.3□□□□□ -1.24
MSH6-209ENST00000538136 ERVW-1Q9UQF0 538 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 MORC2Q9Y6X9 1032 aaPredicted RBP7.3□□□□□ -1.24
MSH6-209ENST00000538136 PLXNA1Q9UIW2 1896 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 CFAP54Q96N23 3096 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 PATE3B3GLJ2 98 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 OPA1O60313 960 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 SRFP11831 508 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 HTR1BP28222 390 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 ETV3P41162 512 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 GNPDA1P46926 289 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 PPP3CCP48454 512 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 AARSP49588 968 aaKnown RBP eCLIP7.3□□□□□ -1.248e-6■■■■■ 52.4
MSH6-209ENST00000538136 SEPHS1P49903 392 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 SATB1Q01826 763 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 ZNF33AQ06730 810 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 FOXM1Q08050 763 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 MEA1Q16626 185 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 SEL1L3Q68CR1 1132 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 C22orf39Q6P5X5 142 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 RFLNAQ6ZTI6 216 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 C3orf62Q6ZUJ4 267 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 SDCCAG8Q86SQ7 713 aaPredicted RBP7.3□□□□□ -1.24
MSH6-209ENST00000538136 AHI1Q8N157 1196 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 DCBLD1Q8N8Z6 715 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 PPHLN1Q8NEY8 458 aaKnown RBP7.3□□□□□ -1.24
MSH6-209ENST00000538136 OR2AP1Q8NGE2 309 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 RIN3Q8TB24 985 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 KCTD13Q8WZ19 329 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 IRGQQ8WZA9 623 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 CDKL2Q92772 493 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 ACDQ96AP0 544 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 OR2AG1Q9H205 316 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 NEUROG2Q9H2A3 272 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 AVENQ9NQS1 362 aaPredicted RBP7.3□□□□□ -1.24
MSH6-209ENST00000538136 SUN2Q9UH99 717 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 ARL5AQ9Y689 179 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 TECTAO75443 2155 aa7.3□□□□□ -1.24
MSH6-209ENST00000538136 SDK2Q58EX2 2172 aa7.29□□□□□ -1.24
MSH6-209ENST00000538136 ARHGAP10A1A4S6 786 aa7.29□□□□□ -1.24
MSH6-209ENST00000538136 SYNDIG1LA6NDD5 238 aa7.29□□□□□ -1.24
MSH6-209ENST00000538136 TMEM221A6NGB7 291 aa7.29□□□□□ -1.24
MSH6-209ENST00000538136 PALM2-AKAP2B1ALY0 433 aaPredicted RBP7.29□□□□□ -1.24
MSH6-209ENST00000538136 M0R296 226 aa7.29□□□□□ -1.24
MSH6-209ENST00000538136 PDE2AO00408 941 aaPredicted RBP7.29□□□□□ -1.24
MSH6-209ENST00000538136 CHADO15335 359 aa7.29□□□□□ -1.24
MSH6-209ENST00000538136 RHOBTB1O94844 696 aa7.29□□□□□ -1.24
MSH6-209ENST00000538136 IGHA2P01877 340 aa7.29□□□□□ -1.24
MSH6-209ENST00000538136 HLA-DQB2P05538 268 aa7.29□□□□□ -1.24
MSH6-209ENST00000538136 GNSP15586 552 aa7.29□□□□□ -1.24
MSH6-209ENST00000538136 MSH3P20585 1137 aa7.29□□□□□ -1.24
MSH6-209ENST00000538136 COILP38432 576 aaPredicted RBP7.29□□□□□ -1.24
MSH6-209ENST00000538136 PI4KAP42356 2102 aa7.29□□□□□ -1.24
MSH6-209ENST00000538136 RGRP47804 291 aa7.29□□□□□ -1.24
MSH6-209ENST00000538136 ZNF132P52740 706 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms