RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 TUBGCP5Q96RT8 1024 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 RBM15Q96T37 977 aaKnown RBP eCLIP11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 SEMA3CQ99985 751 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 SLC13A1Q9BZW2 595 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 PDCL3Q9H2J4 239 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 CLSTN2Q9H4D0 955 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 ZDHHC6Q9H6R6 413 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 PDFQ9HBH1 243 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 IPO11Q9UI26 975 aaKnown RBP11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 PADI4Q9UM07 663 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 NBASA2RRP1 2371 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 J3QKU1 62 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 KRIT1O00522 736 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 FGF10O15520 208 aaPredicted RBP11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 KLK10O43240 276 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 NOBOXO60393 691 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 TMCC1O94876 653 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 ANXA6P08133 673 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 KRT3P12035 628 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 RFC1P35251 1148 aaPredicted RBP11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 SOX5P35711 763 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 ZNF143P52747 638 aaPredicted RBP11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 ADKP55263 362 aaKnown RBP11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 CLN3Q13286 438 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 MTM1Q13496 603 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 SQSTM1Q13501 440 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 RAPGEF1Q13905 1077 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 NR1D2Q14995 579 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 WSCD2Q2TBF2 565 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 DEFB133Q30KQ1 61 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 DPCR1Q3MIW9 517 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 AFMIDQ63HM1 303 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 ESRP1Q6NXG1 681 aaKnown RBP11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 SLFN11Q7Z7L1 901 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 CBARPQ8N350 705 aaPredicted RBP11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 EMC1Q8N766 993 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 ATL2Q8NHH9 583 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 GPT2Q8TD30 523 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 LMX1AQ8TE12 382 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 EPAS1Q99814 870 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 EDEM3Q9BZQ6 932 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 TM6SF2Q9BZW4 377 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 TCEAL2Q9H3H9 227 aaPredicted RBP11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 LRRC19Q9H756 370 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 CAAP1Q9H8G2 361 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 MBNL1Q9NR56 388 aaKnown RBP11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 METTL5Q9NRN9 209 aaKnown RBP11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 GGT7Q9UJ14 662 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 ACTL7AQ9Y615 435 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 LRP4O75096 1905 aa11.33□□□□□ -0.6
CLSTN3-206ENST00000535668 ARHGEF17Q96PE2 2063 aaPredicted RBP11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 SCN8AQ9UQD0 1980 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 CPED1A4D0V7 1026 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 D6RAR5 112 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 GOLGA8SH3BPF8 625 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 NEMP1O14524 444 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 PLD2O14939 933 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 EFSO43281 561 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 RASGRP1O95267 797 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 IGSF6O95976 241 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 CALB1P05937 261 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 MYF5P13349 255 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 MMP12P39900 470 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 DNA2P51530 1060 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 ZNF135P52742 658 aaPredicted RBP11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 NDST2P52849 883 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 KIAA1024LP59773 190 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 ATP11AP98196 1134 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 SPIDRQ14159 915 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 NFATC4Q14934 902 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 LRRC14Q15048 493 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 CAMK4Q16566 473 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 TPD52L1Q16890 204 aaPredicted RBP11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 C15orf59Q2T9L4 293 aaPredicted RBP11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 RAB6CQ53S08 254 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 C2CD6Q53TS8 623 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 WDR59Q6PJI9 974 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 RBM43Q6ZSC3 357 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 MON1BQ7L1V2 547 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 DTX1Q86Y01 620 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 DNAAF5Q86Y56 855 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 RBFAQ8N0V3 343 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 CCDC185Q8N715 623 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 JOSD2Q8TAC2 188 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 FAM172AQ8WUF8 416 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 CCNL2Q96S94 520 aaPredicted RBP11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 CCDC3Q9BQI4 270 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 RAB6CQ9H0N0 254 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 SUV39H2Q9H5I1 410 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 CPNE5Q9HCH3 593 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 KCTD5Q9NXV2 234 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 LHX3Q9UBR4 397 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 DNAI1Q9UI46 699 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 ITM2BQ9Y287 266 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 SIK3Q9Y2K2 1263 aa11.32□□□□□ -0.6
CLSTN3-206ENST00000535668 A0A1W2PQM1 296 aa11.31□□□□□ -0.6
CLSTN3-206ENST00000535668 RASA4BC9J798 803 aa11.31□□□□□ -0.6
CLSTN3-206ENST00000535668 RASA4O43374 803 aa11.31□□□□□ -0.6
CLSTN3-206ENST00000535668 NUDT21O43809 227 aaKnown RBP11.31□□□□□ -0.6
CLSTN3-206ENST00000535668 PRAMEF11O60813 436 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms