RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 SOCS5O75159 536 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 CER1O95813 267 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 TIMP2P16035 220 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 TGM2P21980 687 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 CD38P28907 300 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 NR2C2P49116 596 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 BCL2L1Q07817 233 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 ELP6Q0PNE2 266 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 PDK1Q15118 436 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 SLC45A4Q5BKX6 768 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 LRRC73Q5JTD7 316 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 LAYNQ6UX15 382 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 ADAT2Q7Z6V5 191 aaKnown RBP15.18■□□□□ 0.02
CPSF1-208ENST00000532560 TTC7BQ86TV6 843 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 LRRC8AQ8IWT6 810 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 CCDC13Q8IYE1 715 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 SYCE1Q8N0S2 351 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 TMEM145Q8NBT3 493 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 SKA1Q96BD8 255 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 BRD8Q9H0E9 1235 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 NT5MQ9NPB1 228 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 SCUBE2Q9NQ36 999 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 AASDHPPTQ9NRN7 309 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 HAUS2Q9NVX0 235 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 GGT7Q9UJ14 662 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 ANKRD6Q9Y2G4 727 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 PCDHA3Q9Y5H8 950 aa15.18■□□□□ 0.02
CPSF1-208ENST00000532560 TRPM6Q9BX84 2022 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 NEMP1O14524 444 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 TM4SF5O14894 197 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 WNT9AO14904 365 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 PPP1R12AO14974 1030 aaPredicted RBP15.17■□□□□ 0.02
CPSF1-208ENST00000532560 HTRA2O43464 458 aaPredicted RBP15.17■□□□□ 0.02
CPSF1-208ENST00000532560 CST8O60676 142 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 WNT1P04628 370 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 KRT10P13645 584 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 CCNB1P14635 433 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 PRLRP16471 622 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 HNRNPA2B1P22626 353 aaKnown RBP15.17■□□□□ 0.02
CPSF1-208ENST00000532560 XPAP23025 273 aaPredicted RBP15.17■□□□□ 0.02
CPSF1-208ENST00000532560 PTPN7P35236 360 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 CTSKP43235 329 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 C21orf59P57076 290 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 COPS2P61201 443 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 MAXP61244 160 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 DYNLT1P63172 113 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 IFI35P80217 286 aaPredicted RBP15.17■□□□□ 0.02
CPSF1-208ENST00000532560 CCZ1BP86790 482 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 CCZ1P86791 482 aaPredicted RBP15.17■□□□□ 0.02
CPSF1-208ENST00000532560 OVGP1Q12889 678 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 UGP2Q16851 508 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 KIF19Q2TAC6 998 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 NPNTQ6UXI9 565 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 BZW1Q7L1Q6 419 aaKnown RBP15.17■□□□□ 0.02
CPSF1-208ENST00000532560 NT5DC3Q86UY8 548 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 IQCHQ86VS3 1027 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 ZSWIM9Q86XI8 627 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 CCDC50Q8IVM0 306 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 RNF10Q8N5U6 811 aaKnown RBP15.17■□□□□ 0.02
CPSF1-208ENST00000532560 MFSD2AQ8NA29 543 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 CCNYQ8ND76 341 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 NSMCE3Q96MG7 304 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 LGMNQ99538 433 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 C1QTNF2Q9BXJ5 285 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 POLR1EQ9GZS1 481 aaKnown RBP15.17■□□□□ 0.02
CPSF1-208ENST00000532560 NOD2Q9HC29 1040 aa15.17■□□□□ 0.02
CPSF1-208ENST00000532560 A0A1W2PQ67 120 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 SLC31A1O15431 190 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 KRT86O43790 486 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 NRDCO43847 1150 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 OPHN1O60890 802 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 HLA-DQB2P05538 268 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 ZNF883P0CG24 379 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 CES1P23141 567 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 AKT2P31751 481 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 MMP12P39900 470 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 RWDD2BP57060 319 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 FGL2Q14314 439 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 TMEM52BQ4KMG9 183 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 DNTTIP2Q5QJE6 756 aaKnown RBP15.16■□□□□ 0.02
CPSF1-208ENST00000532560 KAZNQ674X7 775 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 ERAP2Q6P179 960 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 OR2I1PQ8NGU4 316 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 ASB12Q8WXK4 309 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 ALG3Q92685 438 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 KLK6Q92876 244 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 SLC17A9Q9BYT1 436 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 PCDH12Q9NPG4 1184 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 RBM22Q9NW64 420 aaKnown RBP eCLIP15.16■□□□□ 0.02
CPSF1-208ENST00000532560 AMFRQ9UKV5 643 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 EFR3BQ9Y2G0 817 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 ATP8A1Q9Y2Q0 1164 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 SNX11Q9Y5W9 270 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 DOCK9Q9BZ29 2069 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 TP53BP1Q12888 1972 aaPredicted RBP15.16■□□□□ 0.02
CPSF1-208ENST00000532560 SPTBN4Q9H254 2564 aa15.16■□□□□ 0.02
CPSF1-208ENST00000532560 TTC24A2A3L6 582 aaPredicted RBP15.15■□□□□ 0.02
CPSF1-208ENST00000532560 IGLON5A6NGN9 336 aa15.15■□□□□ 0.02
CPSF1-208ENST00000532560 MIF4GDA9UHW6 222 aaKnown RBP15.15■□□□□ 0.02
CPSF1-208ENST00000532560 KCNK1O00180 336 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms