RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 CHST2Q9Y4C5 530 aa4.79□□□□□ -1.64
NUP54-206ENST00000508465 USP34Q70CQ2 3546 aa4.79□□□□□ -1.64
NUP54-206ENST00000508465 DOCK8Q8NF50 2099 aa4.79□□□□□ -1.64
NUP54-206ENST00000508465 CFAP54Q96N23 3096 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 LEFTY2O00292 366 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 ZNF263O14978 683 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 ZNF185O15231 689 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 TACC1O75410 805 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 BEST1O76090 585 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 ESRRBO95718 433 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 ASS1P00966 412 aaKnown RBP4.78□□□□□ -1.64
NUP54-206ENST00000508465 CSH1P0DML2 217 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 CSH2P0DML3 217 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 EPB41P11171 864 aaKnown RBP4.78□□□□□ -1.64
NUP54-206ENST00000508465 GLULP15104 373 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 ARSAP15289 507 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 PSMC3P17980 439 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 HDCP19113 662 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 SLC9A1P19634 815 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 CCNE1P24864 410 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 DDX6P26196 483 aaKnown RBP eCLIP4.78□□□□□ -1.64
NUP54-206ENST00000508465 MGAT1P26572 445 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 ADORA2BP29275 332 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 HOXC13P31276 330 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 IGFALSP35858 605 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 MAGEA11P43364 429 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 PTH2RP49190 550 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 KPNA1P52294 538 aaPredicted RBP4.78□□□□□ -1.64
NUP54-206ENST00000508465 MAP3K7CLP57077 242 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 RNASE9P60153 205 aaKnown RBP4.78□□□□□ -1.64
NUP54-206ENST00000508465 UBE2HP62256 183 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 FKBP3Q00688 224 aaKnown RBP4.78□□□□□ -1.64
NUP54-206ENST00000508465 NHLH1Q02575 133 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 NHLH2Q02577 135 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 SMARCB1Q12824 385 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 TCF15Q12870 199 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 FOXI1Q12951 378 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 TAF10Q12962 218 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 MORC3Q14149 939 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 MLF2Q15773 248 aaPredicted RBP4.78□□□□□ -1.64
NUP54-206ENST00000508465 NFIL3Q16649 462 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 EDRF1Q3B7T1 1238 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 CBWD6Q4V339 395 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 CBWD3Q5JTY5 395 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 CBWD5Q5RIA9 395 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 SP5Q6BEB4 398 aaPredicted RBP4.78□□□□□ -1.64
NUP54-206ENST00000508465 TTI2Q6NXR4 508 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 C4orf50Q6ZRC1 276 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 TPRG1Q6ZUI0 275 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 INTS8Q75QN2 995 aaKnown RBP4.78□□□□□ -1.64
NUP54-206ENST00000508465 MON1AQ86VX9 555 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 CMTM8Q8IZV2 173 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 LEMD2Q8NC56 503 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 PIK3C3Q8NEB9 887 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 PPP1R14CQ8TAE6 165 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 SLC2A14Q8TDB8 520 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 MRPS31Q92665 395 aaKnown RBP4.78□□□□□ -1.64
NUP54-206ENST00000508465 ATOH1Q92858 354 aaPredicted RBP4.78□□□□□ -1.64
NUP54-206ENST00000508465 USP13Q92995 863 aaPredicted RBP4.78□□□□□ -1.64
NUP54-206ENST00000508465 DHTKD1Q96HY7 919 aaPredicted RBP4.78□□□□□ -1.64
NUP54-206ENST00000508465 TWNKQ96RR1 684 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 TSG101Q99816 390 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 GPR88Q9GZN0 384 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 ELOVL4Q9GZR5 314 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 LINC00597Q9H2U6 94 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 TASP1Q9H6P5 420 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 TRPV4Q9HBA0 871 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 TMEM8AQ9HCN3 771 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 ARHGEF3Q9NR81 526 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 FAM49BQ9NUQ9 324 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 TDP1Q9NUW8 608 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 RAB20Q9NX57 234 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 HSFX1Q9UBD0 423 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 ARMCX3Q9UH62 379 aaPredicted RBP4.78□□□□□ -1.64
NUP54-206ENST00000508465 TLK1Q9UKI8 766 aa4.78□□□□□ -1.64
NUP54-206ENST00000508465 NDRG2Q9UN36 371 aaKnown RBP4.78□□□□□ -1.64
NUP54-206ENST00000508465 DENND4AQ7Z401 1863 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 ZDBF2Q9HCK1 2354 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 KANSL1LA0AUZ9 987 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 ZNF840PA6NDX5 716 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 SHISA7A6NL88 538 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 PROB1E7EW31 1015 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 PSMA7O14818 248 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 MAPK13O15264 365 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 NOL4O94818 638 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 FGF19O95750 216 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 TBX18O95935 607 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 FAM163BP0C2L3 166 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 RBP3P10745 1247 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 P4HA1P13674 534 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 AOC1P19801 751 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 ANXA13P27216 316 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 YWHAQP27348 245 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 CDC25CP30307 473 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 GTF2H1P32780 548 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 PLA2G5P39877 138 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 STARD6P59095 220 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 NOP14P78316 857 aaKnown RBP4.77□□□□□ -1.65
NUP54-206ENST00000508465 ZXDBP98169 803 aa4.77□□□□□ -1.65
NUP54-206ENST00000508465 APBA1Q02410 837 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms