RNA–Protein interactions for RNA: ENST00000494334.1

COL1A1-208, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 396 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-208ENST00000494334 WASHC5Q12768 1159 aa13.66□□□□□ -0.22
COL1A1-208ENST00000494334 TRAF2Q12933 501 aa13.66□□□□□ -0.22
COL1A1-208ENST00000494334 KLF1Q13351 362 aaPredicted RBP13.66□□□□□ -0.22
COL1A1-208ENST00000494334 SF3A2Q15428 464 aaKnown RBP13.66□□□□□ -0.22
COL1A1-208ENST00000494334 DUOXA1Q1HG43 343 aa13.66□□□□□ -0.22
COL1A1-208ENST00000494334 TRIM61Q5EBN2 209 aa13.66□□□□□ -0.22
COL1A1-208ENST00000494334 CFAP58Q5T655 872 aa13.66□□□□□ -0.22
COL1A1-208ENST00000494334 SLC23A3Q6PIS1 610 aa13.66□□□□□ -0.22
COL1A1-208ENST00000494334 PRR23CQ6ZRP0 262 aa13.66□□□□□ -0.22
COL1A1-208ENST00000494334 PRPF39Q86UA1 669 aaKnown RBP13.66□□□□□ -0.22
COL1A1-208ENST00000494334 HORMAD1Q86X24 394 aa13.66□□□□□ -0.22
COL1A1-208ENST00000494334 ZCCHC9Q8N567 271 aaKnown RBP13.66□□□□□ -0.22
COL1A1-208ENST00000494334 CEP76Q8TAP6 659 aa13.66□□□□□ -0.22
COL1A1-208ENST00000494334 FEM1CQ96JP0 617 aa13.66□□□□□ -0.22
COL1A1-208ENST00000494334 QKIQ96PU8 341 aaKnown RBP eCLIP13.66□□□□□ -0.22
COL1A1-208ENST00000494334 FAM118BQ9BPY3 351 aa13.66□□□□□ -0.22
COL1A1-208ENST00000494334 C10orf88Q9H8K7 445 aa13.66□□□□□ -0.22
COL1A1-208ENST00000494334 HAUS2Q9NVX0 235 aa13.66□□□□□ -0.22
COL1A1-208ENST00000494334 SUSD2Q9UGT4 822 aa13.66□□□□□ -0.22
COL1A1-208ENST00000494334 PYCARDQ9ULZ3 195 aa13.66□□□□□ -0.22
COL1A1-208ENST00000494334 EP300Q09472 2414 aaPredicted RBP13.65□□□□□ -0.22
COL1A1-208ENST00000494334 RIF1Q5UIP0 2472 aaKnown RBP13.65□□□□□ -0.22
COL1A1-208ENST00000494334 A0A1B0GTW7 788 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 TCRBV7S2A1N4TA0A589 114 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 GOLGA6L9A6NEM1 432 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 USP27XA6NNY8 438 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 UPK3BL1B0FP48 263 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 UPK3BL2E5RIL1 263 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 H7C0C1 242 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 NEMP1O14524 444 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 KCNK3O14649 394 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 RIOK3O14730 519 aaKnown RBP13.65□□□□□ -0.22
COL1A1-208ENST00000494334 KHNYNO15037 678 aaKnown RBP13.65□□□□□ -0.22
COL1A1-208ENST00000494334 BCAT2O15382 392 aaPredicted RBP13.65□□□□□ -0.22
COL1A1-208ENST00000494334 TSPAN6O43657 245 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 FZD6O60353 706 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 SOCS5O75159 536 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 PRKCGP05129 697 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 XPAP23025 273 aaPredicted RBP13.65□□□□□ -0.22
COL1A1-208ENST00000494334 RBL1P28749 1068 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 ATP5OP48047 213 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 SUOXP51687 545 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 EIF3EP60228 445 aaKnown RBP13.65□□□□□ -0.22
COL1A1-208ENST00000494334 POLR2LP62875 67 aaKnown RBP13.65□□□□□ -0.22
COL1A1-208ENST00000494334 ZNF284Q2VY69 593 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 TMEM259Q4ZIN3 620 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 SLC45A4Q5BKX6 768 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 SEL1L2Q5TEA6 688 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 SEL1L3Q68CR1 1132 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 KIAA1161Q6NSJ0 714 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 RABEPKQ7Z6M1 372 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 KIAA2013Q8IYS2 634 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 PDCD6IPQ8WUM4 868 aaKnown RBP13.65□□□□□ -0.22
COL1A1-208ENST00000494334 HTR3CQ8WXA8 447 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 SPOCK2Q92563 424 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 KLK6Q92876 244 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 TEKT5Q96M29 485 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 AGAP3Q96P47 875 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 CARD9Q9H257 536 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 CAPN10Q9HC96 672 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 TM9SF3Q9HD45 589 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 PCDH12Q9NPG4 1184 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 SLC6A14Q9UN76 642 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 PCDHB9Q9Y5E1 797 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 RAI2Q9Y5P3 530 aa13.65□□□□□ -0.22
COL1A1-208ENST00000494334 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.65□□□□□ -0.22
COL1A1-208ENST00000494334 SHROOM3Q8TF72 1996 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 A0A1W2PQ67 120 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 PRR5-ARHGAP8B1AHC4 643 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 ENC1O14682 589 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 WNT9AO14904 365 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 MTSS1O43312 755 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 PGLSO95336 258 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 CFIP05156 583 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 MMP2P08253 660 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 PDHA1P08559 390 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 SERPINF2P08697 491 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 RBP3P10745 1247 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 CD68P34810 354 aaPredicted RBP13.64□□□□□ -0.23
COL1A1-208ENST00000494334 RPS21P63220 83 aaKnown RBP13.64□□□□□ -0.23
COL1A1-208ENST00000494334 RACK1P63244 317 aaKnown RBP13.64□□□□□ -0.23
COL1A1-208ENST00000494334 SKOR1P84550 965 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 ELP6Q0PNE2 266 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 FGL2Q14314 439 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 TMEM52BQ4KMG9 183 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 ZNF569Q5MCW4 686 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 ARMC12Q5T9G4 340 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 ERAP2Q6P179 960 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 SLC13A5Q86YT5 568 aaPredicted RBP13.64□□□□□ -0.23
COL1A1-208ENST00000494334 PAF1Q8N7H5 531 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 C12orf50Q8NA57 414 aaPredicted RBP13.64□□□□□ -0.23
COL1A1-208ENST00000494334 TTC13Q8NBP0 860 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 PIH1D2Q8WWB5 315 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 SLC6A18Q96N87 628 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 VAT1Q99536 393 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 NUSAP1Q9BXS6 441 aaKnown RBP13.64□□□□□ -0.23
COL1A1-208ENST00000494334 TDRD1Q9BXT4 1180 aaKnown RBP13.64□□□□□ -0.23
COL1A1-208ENST00000494334 SLC17A9Q9BYT1 436 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 GLOD4Q9HC38 313 aa13.64□□□□□ -0.23
COL1A1-208ENST00000494334 FSCN3Q9NQT6 498 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms