RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 SLC10A7Q0GE19 358 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 MMRN1Q13201 1228 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 ST3GAL2Q16842 350 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 UGP2Q16851 508 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 TMEM52BQ4KMG9 183 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 HS1BP3Q53T59 392 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 CCDC157Q569K6 752 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 CAMK1DQ8IU85 385 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 MAP7D3Q8IWC1 876 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 KCTD6Q8NC69 237 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 FAM71BQ8TC56 605 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 IFT43Q96FT9 208 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 BMFQ96LC9 184 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 PSKH2Q96QS6 385 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 KLF6Q99612 283 aaPredicted RBP15.23■□□□□ 0.03
USP39-217ENST00000491659 CHP1Q99653 195 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 ZNF670Q9BS34 389 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 GPR27Q9NS67 375 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 SPTLC3Q9NUV7 552 aa15.23■□□□□ 0.03
USP39-217ENST00000491659 TDRD6O60522 2096 aaKnown RBP15.23■□□□□ 0.03
USP39-217ENST00000491659 CEP295Q9C0D2 2601 aa15.22■□□□□ 0.03
USP39-217ENST00000491659 C1QTNF9BB2RNN3 333 aa15.22■□□□□ 0.03
USP39-217ENST00000491659 H3BM21 787 aa15.22■□□□□ 0.03
USP39-217ENST00000491659 BUB1BO60566 1050 aaPredicted RBP15.22■□□□□ 0.03
USP39-217ENST00000491659 DKK1O94907 266 aa15.22■□□□□ 0.03
USP39-217ENST00000491659 CD48P09326 243 aa15.22■□□□□ 0.03
USP39-217ENST00000491659 C1QTNF9P0C862 333 aa15.22■□□□□ 0.03
USP39-217ENST00000491659 ITIH2P19823 946 aa15.22■□□□□ 0.03
USP39-217ENST00000491659 SCNN1BP51168 640 aa15.22■□□□□ 0.03
USP39-217ENST00000491659 PDE1CQ14123 709 aaPredicted RBP15.22■□□□□ 0.03
USP39-217ENST00000491659 DPYSL3Q14195 570 aa15.22■□□□□ 0.03
USP39-217ENST00000491659 PDK2Q15119 407 aa15.22■□□□□ 0.03
USP39-217ENST00000491659 KANSL1Q7Z3B3 1105 aa15.22■□□□□ 0.03
USP39-217ENST00000491659 PARGQ86W56 976 aa15.22■□□□□ 0.03
USP39-217ENST00000491659 RHOT2Q8IXI1 618 aa15.22■□□□□ 0.03
USP39-217ENST00000491659 GATA6Q92908 595 aa15.22■□□□□ 0.03
USP39-217ENST00000491659 PCDH12Q9NPG4 1184 aa15.22■□□□□ 0.03
USP39-217ENST00000491659 DNAJC28Q9NX36 388 aa15.22■□□□□ 0.03
USP39-217ENST00000491659 ATP8A1Q9Y2Q0 1164 aa15.22■□□□□ 0.03
USP39-217ENST00000491659 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.21■□□□□ 0.03
USP39-217ENST00000491659 TMEM8BA6NDV4 472 aa15.21■□□□□ 0.03
USP39-217ENST00000491659 RIOK3O14730 519 aaKnown RBP15.21■□□□□ 0.03
USP39-217ENST00000491659 MUSKO15146 869 aa15.21■□□□□ 0.03
USP39-217ENST00000491659 MFSD11O43934 449 aa15.21■□□□□ 0.03
USP39-217ENST00000491659 MAFKO60675 156 aa15.21■□□□□ 0.03
USP39-217ENST00000491659 PROS1P07225 676 aa15.21■□□□□ 0.03
USP39-217ENST00000491659 ALPPL2P10696 532 aa15.21■□□□□ 0.03
USP39-217ENST00000491659 IL4RP24394 825 aa15.21■□□□□ 0.03
USP39-217ENST00000491659 IGFALSP35858 605 aa15.21■□□□□ 0.03
USP39-217ENST00000491659 MMP12P39900 470 aa15.21■□□□□ 0.03
USP39-217ENST00000491659 MMP13P45452 471 aa15.21■□□□□ 0.03
USP39-217ENST00000491659 ARSEP51690 589 aa15.21■□□□□ 0.03
USP39-217ENST00000491659 THOP1P52888 689 aa15.21■□□□□ 0.03
USP39-217ENST00000491659 TAS2R40P59535 323 aa15.21■□□□□ 0.03
USP39-217ENST00000491659 HNRNPKP61978 463 aaKnown RBP eCLIP15.21■□□□□ 0.03
USP39-217ENST00000491659 POLR2LP62875 67 aaKnown RBP15.21■□□□□ 0.03
USP39-217ENST00000491659 TBX2Q13207 712 aaPredicted RBP15.21■□□□□ 0.03
USP39-217ENST00000491659 PTK2BQ14289 1009 aa15.21■□□□□ 0.03
USP39-217ENST00000491659 MESDQ14696 234 aa15.21■□□□□ 0.03
USP39-217ENST00000491659 CPNE8Q86YQ8 564 aa15.21■□□□□ 0.03
USP39-217ENST00000491659 LRRC49Q8IUZ0 686 aa15.21■□□□□ 0.03
USP39-217ENST00000491659 SLC35G2Q8TBE7 412 aa15.21■□□□□ 0.03
USP39-217ENST00000491659 SCUBE2Q9NQ36 999 aa15.21■□□□□ 0.03
USP39-217ENST00000491659 TPRP12270 2363 aaKnown RBP15.21■□□□□ 0.03
USP39-217ENST00000491659 MAP1BP46821 2468 aaKnown RBP15.2■□□□□ 0.02
USP39-217ENST00000491659 SPTY2D1-AS1A0A0U1RR47 76 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 FAM221BA6H8Z2 402 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 TOR1BO14657 336 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 LZTS3O60299 673 aaPredicted RBP15.2■□□□□ 0.02
USP39-217ENST00000491659 SOCS5O75159 536 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 RFPL3O75679 317 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 PIAS2O75928 621 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 CDK4P11802 303 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 C6P13671 934 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 NME1P15531 152 aaKnown RBP15.2■□□□□ 0.02
USP39-217ENST00000491659 DGKAP23743 735 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 ARHGAP25P42331 645 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 PFN3P60673 137 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 DNAJC3Q13217 504 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 FZD2Q14332 565 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 PAFAH1B3Q15102 231 aaKnown RBP15.2■□□□□ 0.02
USP39-217ENST00000491659 ATP13A4Q4VNC1 1196 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 ANKRD20A8PQ5CZ79 823 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 MARC1Q5VT66 337 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 NCBP2-AS2Q69YL0 99 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 ZSWIM9Q86XI8 627 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 GALNT15Q8N3T1 639 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 TP53I13Q8NBR0 393 aaPredicted RBP15.2■□□□□ 0.02
USP39-217ENST00000491659 RFFLQ8WZ73 363 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 CENPTQ96BT3 561 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 ECHDC3Q96DC8 303 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 NUDCD1Q96RS6 583 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 MGME1Q9BQP7 344 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 COQ6Q9Y2Z9 468 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 PCDHGA1Q9Y5H4 931 aa15.2■□□□□ 0.02
USP39-217ENST00000491659 A0A1W2PQ67 120 aa15.19■□□□□ 0.02
USP39-217ENST00000491659 NEMP2A6NFY4 417 aa15.19■□□□□ 0.02
USP39-217ENST00000491659 FFAR2O15552 330 aa15.19■□□□□ 0.02
USP39-217ENST00000491659 MTA2O94776 668 aa15.19■□□□□ 0.02
USP39-217ENST00000491659 PEX11BO96011 259 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms