RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 SERPINA6P08185 405 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 CKBP12277 381 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 COX4I1P13073 169 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 TACR2P21452 398 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 CST9Q5W186 159 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 FSTL5Q8N475 847 aaPredicted RBP13.33□□□□□ -0.28
HMGN1-216ENST00000486741 GRIN3AQ8TCU5 1115 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 RCN3Q96D15 328 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 DNAJC1Q96KC8 554 aaKnown RBP13.33□□□□□ -0.28
HMGN1-216ENST00000486741 TRIM15Q9C019 465 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 RNF186Q9NXI6 227 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 TAS2R1Q9NYW7 299 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 CD3EAPO15446 510 aaKnown RBP13.33□□□□□ -0.28
HMGN1-216ENST00000486741 C1RP00736 705 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 DSG1Q02413 1049 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 PTPRCAPQ14761 206 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 NR6A1Q15406 480 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 SYTL3Q4VX76 610 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 ANKS6Q68DC2 871 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 FBXL22Q6P050 247 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 OTOP2Q7RTS6 562 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 LRRTM3Q86VH5 581 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 ULK2Q8IYT8 1036 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 NPWQ8N729 165 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 SUSD3Q96L08 255 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 ZNF558Q96NG5 402 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 MRPL40Q9NQ50 206 aaKnown RBP13.33□□□□□ -0.28
HMGN1-216ENST00000486741 PCDHB12Q9Y5F1 795 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 HS3ST4Q9Y661 456 aa13.33□□□□□ -0.28
HMGN1-216ENST00000486741 FAM159BA6NKW6 160 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 RASSF9O75901 435 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 RHOQP17081 205 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 ACVRL1P37023 503 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 BOP1Q14137 746 aaKnown RBP13.32□□□□□ -0.28
HMGN1-216ENST00000486741 KRT33BQ14525 404 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 IYDQ6PHW0 289 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 MARK2Q7KZI7 788 aaKnown RBP13.32□□□□□ -0.28
HMGN1-216ENST00000486741 SLC22A9Q8IVM8 553 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 CNDP1Q96KN2 507 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 THUMPD3Q9BV44 507 aaKnown RBP13.32□□□□□ -0.28
HMGN1-216ENST00000486741 CADM1Q9BY67 442 aaKnown RBP13.32□□□□□ -0.28
HMGN1-216ENST00000486741 VCX3AQ9NNX9 186 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 ZFP37Q9Y6Q3 630 aaPredicted RBP13.32□□□□□ -0.28
HMGN1-216ENST00000486741 LY75O60449 1722 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 MBLAC1A4D2B0 266 aaPredicted RBP13.32□□□□□ -0.28
HMGN1-216ENST00000486741 MAP4P27816 1152 aaKnown RBP13.32□□□□□ -0.28
HMGN1-216ENST00000486741 PSEN1P49768 467 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 BCL2L1Q07817 233 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 KHDC1Q4VXA5 237 aaKnown RBP13.32□□□□□ -0.28
HMGN1-216ENST00000486741 C17orf99Q6UX52 265 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 CCDC138Q96M89 665 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.32□□□□□ -0.284e-10■■■■□ 24
HMGN1-216ENST00000486741 NMUR1Q9HB89 426 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 SLC12A4Q9UP95 1085 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 Q9Y3F1 56 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 RAP2CQ9Y3L5 183 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 TCAF1Q9Y4C2 921 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 FKTNO75072 461 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 SIN3BO75182 1162 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 ESRRBO95718 433 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 RALGPS1Q5JS13 557 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 ARMC12Q5T9G4 340 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 METTL6Q8TCB7 284 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 MLPHQ9BV36 600 aaPredicted RBP13.32□□□□□ -0.28
HMGN1-216ENST00000486741 CDH19Q9H159 772 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 PKD2L2Q9NZM6 624 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 VPS9D1Q9Y2B5 631 aa13.32□□□□□ -0.28
HMGN1-216ENST00000486741 MRASO14807 208 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 GABRR2P28476 465 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 SLC1A2P43004 574 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 NFYCQ13952 458 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 MORN1Q5T089 497 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 TMEM198Q66K66 360 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 CLEC6AQ6EIG7 209 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 RPS27LQ71UM5 84 aaKnown RBP13.31□□□□□ -0.28
HMGN1-216ENST00000486741 HPS6Q86YV9 775 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 RELL1Q8IUW5 271 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 MYO1HQ8N1T3 1032 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 MIER2Q8N344 545 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 FBXO22Q8NEZ5 403 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 OR4L1Q8NH43 312 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 OLIG1Q8TAK6 271 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 SH3KBP1Q96B97 665 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 C7orf26Q96N11 449 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 HBEGFQ99075 208 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 SEMA6AQ9H2E6 1030 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 ASB8Q9H765 288 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 MRPL17Q9NRX2 175 aaKnown RBP13.31□□□□□ -0.28
HMGN1-216ENST00000486741 SRRDQ9UH36 339 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 KCTD3Q9Y597 815 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 RBM47A0AV96 593 aaKnown RBP13.31□□□□□ -0.28
HMGN1-216ENST00000486741 SCNN1AP37088 669 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 PRKD1Q15139 912 aaPredicted RBP13.31□□□□□ -0.28
HMGN1-216ENST00000486741 AARS2Q5JTZ9 985 aaKnown RBP13.31□□□□□ -0.28
HMGN1-216ENST00000486741 HECTD2Q5U5R9 776 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 SLC30A9Q6PML9 568 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 PLD6Q8N2A8 252 aaKnown RBP13.31□□□□□ -0.28
HMGN1-216ENST00000486741 NPAS2Q99743 824 aa13.31□□□□□ -0.28
HMGN1-216ENST00000486741 MRPL57Q9BQC6 102 aaKnown RBP13.31□□□□□ -0.28
HMGN1-216ENST00000486741 CENPKQ9BS16 269 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms