RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 J3KR12 359 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 SLC31A1O15431 190 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 ZSCAN12O43309 604 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 MTSS1O43312 755 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 MFSD11O43934 449 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 RNGTTO60942 597 aaKnown RBP8.13□□□□□ -1.11
USP40-216ENST00000485943 ZNF189O75820 626 aaPredicted RBP8.13□□□□□ -1.11
USP40-216ENST00000485943 MTA2O94776 668 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 TJP3O95049 919 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 MAP3K6O95382 1288 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 LCA5LO95447 670 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 CYP2A6P11509 494 aaPredicted RBP8.13□□□□□ -1.11
USP40-216ENST00000485943 ADRB3P13945 408 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 TCF4P15884 667 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 CES1P23141 567 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 CD27P26842 260 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 GARSP41250 739 aaKnown RBP8.13□□□□□ -1.11
USP40-216ENST00000485943 PI4KAP42356 2102 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 THOP1P52888 689 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 TAS2R40P59535 323 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 AP1S1P61966 158 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 RPS21P63220 83 aaKnown RBP8.13□□□□□ -1.11
USP40-216ENST00000485943 SEMA3BQ13214 749 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 DPYSQ14117 519 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 LLGL1Q15334 1064 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 SF3A2Q15428 464 aaKnown RBP8.13□□□□□ -1.11
USP40-216ENST00000485943 ATP13A4Q4VNC1 1196 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 DENND2CQ68D51 928 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 KIAA1161Q6NSJ0 714 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 BRAT1Q6PJG6 821 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 RAD9BQ6WBX8 426 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 PTAR1Q7Z6K3 402 aaPredicted RBP8.13□□□□□ -1.11
USP40-216ENST00000485943 SRLQ86TD4 932 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 ARFGAP1Q8N6T3 406 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 NETO2Q8NC67 525 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 CHST14Q8NCH0 376 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 FRS2Q8WU20 508 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 TFB1MQ8WVM0 346 aaKnown RBP8.13□□□□□ -1.11
USP40-216ENST00000485943 SCG3Q8WXD2 468 aaKnown RBP8.13□□□□□ -1.11
USP40-216ENST00000485943 ITPKCQ96DU7 683 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 IFT43Q96FT9 208 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 MYO19Q96H55 970 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 RNF157Q96PX1 679 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 TUBGCP5Q96RT8 1024 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 MYOCQ99972 504 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 BRD8Q9H0E9 1235 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 SMOC1Q9H4F8 434 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 C6orf106Q9H6K1 298 aaPredicted RBP8.13□□□□□ -1.11
USP40-216ENST00000485943 LRRC19Q9H756 370 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 CD93Q9NPY3 652 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 RBM22Q9NW64 420 aaKnown RBP eCLIP8.13□□□□□ -1.11
USP40-216ENST00000485943 TOR4AQ9NXH8 423 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 SCHIP1Q9P0W5 487 aaPredicted RBP8.13□□□□□ -1.11
USP40-216ENST00000485943 EGFL7Q9UHF1 273 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 MBD1Q9UIS9 605 aaPredicted RBP8.13□□□□□ -1.11
USP40-216ENST00000485943 HCN2Q9UL51 889 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 PPM1HQ9ULR3 514 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 DMTF1Q9Y222 760 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 OR51B4Q9Y5P0 310 aa8.13□□□□□ -1.11
USP40-216ENST00000485943 PTPRZ1P23471 2315 aaPredicted RBP8.13□□□□□ -1.11
USP40-216ENST00000485943 ANKRD36A6QL64 1941 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 A0A1W2PQU0 124 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 C16orf96A6NNT2 1141 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 BTNL10A8MVZ5 291 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 PRAMEF26H0Y7S4 382 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 PLK4O00444 970 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 FPGTO14772 594 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 TSPAN6O43657 245 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 PLRG1O43660 514 aaKnown RBP8.12□□□□□ -1.11
USP40-216ENST00000485943 CST8O60676 142 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 TM7SF2O76062 418 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 PIGNO95427 931 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 CPP00450 1065 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 SERPINF2P08697 491 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 CD48P09326 243 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 CCNB1P14635 433 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 TGM2P21980 687 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 HNRNPA2B1P22626 353 aaKnown RBP8.12□□□□□ -1.11
USP40-216ENST00000485943 CCNCP24863 283 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 CD38P28907 300 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 GKP32189 559 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 ID4P47928 161 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 NR2C2P49116 596 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 ARRB1P49407 418 aaPredicted RBP8.12□□□□□ -1.11
USP40-216ENST00000485943 SUOXP51687 545 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 ZNF211Q13398 564 aaPredicted RBP8.12□□□□□ -1.11
USP40-216ENST00000485943 PRPSAP1Q14558 356 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 PAFAH1B3Q15102 231 aaKnown RBP8.12□□□□□ -1.11
USP40-216ENST00000485943 ARMC12Q5T9G4 340 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 NCBP2-AS2Q69YL0 99 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 TXNRD3NBQ6F5E7 133 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 NEK5Q6P3R8 708 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 DARS2Q6PI48 645 aaKnown RBP8.12□□□□□ -1.11
USP40-216ENST00000485943 SPOCD1Q6ZMY3 1216 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 USP45Q70EL2 814 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 ZC3H18Q86VM9 953 aaKnown RBP8.12□□□□□ -1.11
USP40-216ENST00000485943 VSIG1Q86XK7 387 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 LRRC8AQ8IWT6 810 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 OXR1Q8N573 874 aa8.12□□□□□ -1.11
USP40-216ENST00000485943 RNF10Q8N5U6 811 aaKnown RBP8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms