RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 BRAT1Q6PJG6 821 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 NPNTQ6UXI9 565 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 DAAM2Q86T65 1068 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 IQCHQ86VS3 1027 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 SPATS2Q86XZ4 545 aaKnown RBP15.73■□□□□ 0.11
HMGA1-206ENST00000478214 RFX6Q8HWS3 928 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 TEX26Q8N6G2 289 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.73■□□□□ 0.11
HMGA1-206ENST00000478214 TSGA13Q96PP4 275 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 NUDCD1Q96RS6 583 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 MGME1Q9BQP7 344 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 DESI2Q9BSY9 194 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 WRAP53Q9BUR4 548 aaKnown RBP15.73■□□□□ 0.11
HMGA1-206ENST00000478214 MAK16Q9BXY0 300 aaKnown RBP15.73■□□□□ 0.11
HMGA1-206ENST00000478214 NOD2Q9HC29 1040 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 NT5MQ9NPB1 228 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 PCDH12Q9NPG4 1184 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 SCUBE2Q9NQ36 999 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 GDF3Q9NR23 364 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 HEY1Q9Y5J3 304 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 GOLGA6L6A8MZA4 724 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 MATN3O15232 486 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 PJA2O43164 708 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 CCNCP24863 283 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 SUOXP51687 545 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 NAP1L1P55209 391 aaKnown RBP15.72■□□□□ 0.11
HMGA1-206ENST00000478214 DYNLT1P63172 113 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 IL9RQ01113 521 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 SEMG2Q02383 582 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 OVGP1Q12889 678 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 SGCGQ13326 291 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 HNRNPDQ14103 355 aaKnown RBP15.72■□□□□ 0.11
HMGA1-206ENST00000478214 LLGL1Q15334 1064 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 GCNT7Q6ZNI0 430 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 KIAA1328Q86T90 577 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 ZSCAN30Q86W11 494 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 PAF1Q8N7H5 531 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 CCNYQ8ND76 341 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 MAML1Q92585 1016 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 KRT35Q92764 455 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 ECHDC3Q96DC8 303 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 KLHDC7BQ96G42 594 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 ZNF830Q96NB3 372 aaPredicted RBP15.72■□□□□ 0.11
HMGA1-206ENST00000478214 CAMK1GQ96NX5 476 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 LGMNQ99538 433 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 ELF4Q99607 663 aaPredicted RBP15.72■□□□□ 0.11
HMGA1-206ENST00000478214 SLC32A1Q9H598 525 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 PCDHGC4Q9Y5F7 938 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 DOCK9Q9BZ29 2069 aa15.72■□□□□ 0.11
HMGA1-206ENST00000478214 CABIN1Q9Y6J0 2220 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 A0A0U1RQJ8 604 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 A0A1B0GTQ1 180 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.71■□□□□ 0.11
HMGA1-206ENST00000478214 BTNL10A8MVZ5 291 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 RIOK3O14730 519 aaKnown RBP15.71■□□□□ 0.11
HMGA1-206ENST00000478214 THEGLP0DJG4 465 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 KRT10P13645 584 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 CEACAM1P13688 526 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 ZFXP17010 805 aaPredicted RBP15.71■□□□□ 0.11
HMGA1-206ENST00000478214 CDKN2BP42772 138 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 CCT8P50990 548 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 ELP6Q0PNE2 266 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 SHBQ15464 509 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 TAZQ16635 292 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 TMEM52BQ4KMG9 183 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 TIGD7Q6NT04 549 aaPredicted RBP15.71■□□□□ 0.11
HMGA1-206ENST00000478214 ERAP2Q6P179 960 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 SPOCD1Q6ZMY3 1216 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 NAXDQ8IW45 347 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 KATNAL2Q8IYT4 538 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.71■□□□□ 0.11
HMGA1-206ENST00000478214 OR13H1Q8NG92 308 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 CXorf40AQ8TE69 158 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 ASB12Q8WXK4 309 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 FATE1Q969F0 183 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 HDAC11Q96DB2 347 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 BMFQ96LC9 184 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 KLF6Q99612 283 aaPredicted RBP15.71■□□□□ 0.11
HMGA1-206ENST00000478214 RBM22Q9NW64 420 aaKnown RBP eCLIP15.71■□□□□ 0.112e-14■■■■□ 21.8
HMGA1-206ENST00000478214 ATP8A1Q9Y2Q0 1164 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 PCDHGB2Q9Y5G2 931 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 HS3ST3A1Q9Y663 406 aa15.71■□□□□ 0.11
HMGA1-206ENST00000478214 TRPM6Q9BX84 2022 aa15.7■□□□□ 0.1
HMGA1-206ENST00000478214 POM121BA6NF01 834 aa15.7■□□□□ 0.1
HMGA1-206ENST00000478214 KCNK1O00180 336 aa15.7■□□□□ 0.1
HMGA1-206ENST00000478214 HTRA2O43464 458 aaPredicted RBP15.7■□□□□ 0.1
HMGA1-206ENST00000478214 DFNA5O60443 496 aa15.7■□□□□ 0.1
HMGA1-206ENST00000478214 MAGEC1O60732 1142 aa15.7■□□□□ 0.1
HMGA1-206ENST00000478214 SOCS5O75159 536 aa15.7■□□□□ 0.1
HMGA1-206ENST00000478214 TM7SF2O76062 418 aa15.7■□□□□ 0.1
HMGA1-206ENST00000478214 ZRANB2O95218 330 aaKnown RBP eCLIP15.7■□□□□ 0.1
HMGA1-206ENST00000478214 CCNB1P14635 433 aa15.7■□□□□ 0.1
HMGA1-206ENST00000478214 MMP12P39900 470 aa15.7■□□□□ 0.1
HMGA1-206ENST00000478214 FAM193AP78312 1265 aa15.7■□□□□ 0.1
HMGA1-206ENST00000478214 ITKQ08881 620 aa15.7■□□□□ 0.1
HMGA1-206ENST00000478214 TRAF2Q12933 501 aa15.7■□□□□ 0.1
HMGA1-206ENST00000478214 RALGPS1Q5JS13 557 aa15.7■□□□□ 0.1
HMGA1-206ENST00000478214 FAM182AQ5T1J6 154 aa15.7■□□□□ 0.1
HMGA1-206ENST00000478214 N4BP2L1Q5TBK1 243 aaPredicted RBP15.7■□□□□ 0.1
HMGA1-206ENST00000478214 KAZNQ674X7 775 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms