RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 ASPAP45381 313 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 CCL11P51671 97 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 OR1D5P58170 312 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 LTBQ06643 244 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 VWA5B1Q5TIE3 1220 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 ENPP7Q6UWV6 458 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 PARS2Q7L3T8 475 aaKnown RBP8.13□□□□□ -1.11
USP54-211ENST00000474929 SYVN1Q86TM6 617 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 VPS36Q86VN1 386 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 PARP9Q8IXQ6 854 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 LGI2Q8N0V4 545 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 CCAR2Q8N163 923 aaKnown RBP8.13□□□□□ -1.11
USP54-211ENST00000474929 CFAP52Q8N1V2 620 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 CISD2Q8N5K1 135 aaKnown RBP8.13□□□□□ -1.11
USP54-211ENST00000474929 RBMXL3Q8N7X1 1067 aaKnown RBP8.13□□□□□ -1.11
USP54-211ENST00000474929 ATP11CQ8NB49 1132 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 XXYLT1Q8NBI6 393 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 FBXO18Q8NFZ0 1043 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 COG1Q8WTW3 980 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 IRGQQ8WZA9 623 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 EDEM1Q92611 657 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 AHCYL2Q96HN2 611 aaKnown RBP8.13□□□□□ -1.11
USP54-211ENST00000474929 BTN2A3PQ96KV6 586 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 RANBP9Q96S59 729 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 SMAD5Q99717 465 aaKnown RBP8.13□□□□□ -1.11
USP54-211ENST00000474929 MDFIQ99750 246 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 GPR87Q9BY21 358 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 PDP2Q9P2J9 529 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 OSGIN2Q9Y236 505 aa8.13□□□□□ -1.11
USP54-211ENST00000474929 SPTLC2O15270 562 aa8.12□□□□□ -1.11
USP54-211ENST00000474929 LEFTY1O75610 366 aa8.12□□□□□ -1.11
USP54-211ENST00000474929 IPO13O94829 963 aaKnown RBP8.12□□□□□ -1.11
USP54-211ENST00000474929 SRCP12931 536 aa8.12□□□□□ -1.11
USP54-211ENST00000474929 F8A1P23610 371 aa8.12□□□□□ -1.11
USP54-211ENST00000474929 VAMP7P51809 220 aa8.12□□□□□ -1.11
USP54-211ENST00000474929 RRADP55042 308 aa8.12□□□□□ -1.11
USP54-211ENST00000474929 TLE4Q04727 773 aa8.12□□□□□ -1.11
USP54-211ENST00000474929 MIIPQ5JXC2 388 aa8.12□□□□□ -1.11
USP54-211ENST00000474929 C22orf39Q6P5X5 142 aa8.12□□□□□ -1.11
USP54-211ENST00000474929 LINGO4Q6UY18 593 aa8.12□□□□□ -1.11
USP54-211ENST00000474929 BHLHA9Q7RTU4 235 aa8.12□□□□□ -1.11
USP54-211ENST00000474929 FJX1Q86VR8 437 aa8.12□□□□□ -1.11
USP54-211ENST00000474929 C17orf82Q86X59 251 aaPredicted RBP8.12□□□□□ -1.11
USP54-211ENST00000474929 ZNF295-AS1Q8N0V1 137 aa8.12□□□□□ -1.11
USP54-211ENST00000474929 ANKRD52Q8NB46 1076 aa8.12□□□□□ -1.11
USP54-211ENST00000474929 OR10G6Q8NH81 332 aa8.12□□□□□ -1.11
USP54-211ENST00000474929 CXorf40AQ8TE69 158 aa8.12□□□□□ -1.11
USP54-211ENST00000474929 TSACCQ96A04 125 aaPredicted RBP8.12□□□□□ -1.11
USP54-211ENST00000474929 CTRCQ99895 268 aa8.12□□□□□ -1.11
USP54-211ENST00000474929 FOXC2Q99958 501 aa8.12□□□□□ -1.11
USP54-211ENST00000474929 CGNQ9P2M7 1197 aaKnown RBP8.12□□□□□ -1.11
USP54-211ENST00000474929 HESX1Q9UBX0 185 aa8.12□□□□□ -1.11
USP54-211ENST00000474929 SLC12A6Q9UHW9 1150 aa8.12□□□□□ -1.11
USP54-211ENST00000474929 IGHV1OR21-1A0A087WYE8 117 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 ARGFXA6NJG6 315 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 FAM171A2A8MVW0 826 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 RASA4BC9J798 803 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 TNFRSF10CO14798 259 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 RASA4O43374 803 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 BMP15O95972 392 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 MOCS2O96007 188 aaPredicted RBP8.11□□□□□ -1.11
USP54-211ENST00000474929 TACR2P21452 398 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 CSF2RBP32927 897 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 LONP1P36776 959 aaKnown RBP8.11□□□□□ -1.11
USP54-211ENST00000474929 PPM1FP49593 454 aaPredicted RBP8.11□□□□□ -1.11
USP54-211ENST00000474929 TOB1P50616 345 aaPredicted RBP8.11□□□□□ -1.11
USP54-211ENST00000474929 CASP5P51878 434 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 NDST2P52849 883 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 HMGN5P82970 282 aaKnown RBP8.11□□□□□ -1.11
USP54-211ENST00000474929 ADIGQ0VDE8 80 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 BST2Q10589 180 aaKnown RBP8.11□□□□□ -1.11
USP54-211ENST00000474929 ILF3Q12906 894 aaKnown RBP eCLIP8.11□□□□□ -1.119e-9■■■■■ 29.8
USP54-211ENST00000474929 LRRC14Q15048 493 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 ARSIQ5FYB1 569 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 CPZQ66K79 652 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 ARHGAP17Q68EM7 881 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 FCRL6Q6DN72 434 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 CXorf57Q6NSI4 855 aaKnown RBP8.11□□□□□ -1.11
USP54-211ENST00000474929 XKRXQ6PP77 449 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 WDR74Q6RFH5 385 aaPredicted RBP8.11□□□□□ -1.11
USP54-211ENST00000474929 TMEM135Q86UB9 458 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 IRF2BP1Q8IU81 584 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 PCDH20Q8N6Y1 951 aaKnown RBP8.11□□□□□ -1.11
USP54-211ENST00000474929 ATP6V0D2Q8N8Y2 350 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 TMEM102Q8N9M5 508 aaPredicted RBP8.11□□□□□ -1.11
USP54-211ENST00000474929 DCAF4L2Q8NA75 395 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 TP53I13Q8NBR0 393 aaPredicted RBP8.11□□□□□ -1.11
USP54-211ENST00000474929 CCDC150Q8NCX0 1101 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 LRRN4CLQ8ND94 238 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 OR56A4Q8NGH8 313 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 ITLN2Q8WWU7 325 aaPredicted RBP8.11□□□□□ -1.11
USP54-211ENST00000474929 NINJ1Q92982 152 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 RELTQ969Z4 430 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 PDXPQ96GD0 296 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 FAXDC2Q96IV6 333 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 FCRL2Q96LA5 508 aaPredicted RBP8.11□□□□□ -1.11
USP54-211ENST00000474929 TWNKQ96RR1 684 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 HEPHQ9BQS7 1158 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 FEM1AQ9BSK4 669 aa8.11□□□□□ -1.11
USP54-211ENST00000474929 GSDMCQ9BYG8 508 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms