RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 FTLP02792 175 aaPredicted RBP8.16□□□□□ -1.1
USP48-207ENST00000471752 FUCA1P04066 466 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 TSHRP16473 764 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 ERCC2P18074 760 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 COL5A1P20908 1838 aaPredicted RBP8.16□□□□□ -1.1
USP48-207ENST00000471752 AMPD1P23109 780 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 PSMA2P25787 234 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 MIPP30301 263 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 NUDT1P36639 197 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 EIF4A3P38919 411 aaKnown RBP8.16□□□□□ -1.1
USP48-207ENST00000471752 LIG3P49916 1009 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 SNRPD1P62314 119 aaKnown RBP8.16□□□□□ -1.1
USP48-207ENST00000471752 DAB2P98082 770 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 MMRN1Q13201 1228 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 NR1I3Q14994 352 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 IQCB1Q15051 598 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 INAVAQ3KP66 663 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 TMEM52BQ4KMG9 183 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 ATP13A4Q4VNC1 1196 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 PRRT3Q5FWE3 981 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 EFHC2Q5JST6 749 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 CCDC183Q5T5S1 534 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 AFMIDQ63HM1 303 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 KIAA1161Q6NSJ0 714 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 DCUN1D2Q6PH85 259 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 KYAT3Q6YP21 454 aaKnown RBP8.16□□□□□ -1.1
USP48-207ENST00000471752 RFLNAQ6ZTI6 216 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 EFL1Q7Z2Z2 1120 aaKnown RBP8.16□□□□□ -1.1
USP48-207ENST00000471752 RD3Q7Z3Z2 195 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 PGBD5Q8N414 524 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 OXR1Q8N573 874 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 CCL4L1Q8NHW4 92 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 IFI44Q8TCB0 444 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 ATXN7L3BQ96GX2 97 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 PRR11Q96HE9 360 aaPredicted RBP8.16□□□□□ -1.1
USP48-207ENST00000471752 PPP1R16AQ96I34 528 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 EPAS1Q99814 870 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 FUCA2Q9BTY2 467 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 SNRNP25Q9BV90 132 aaKnown RBP8.16□□□□□ -1.1
USP48-207ENST00000471752 LRRC61Q9BV99 259 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 LGR4Q9BXB1 951 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 SUV39H2Q9H5I1 410 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 DHX35Q9H5Z1 703 aaKnown RBP8.16□□□□□ -1.1
USP48-207ENST00000471752 PRORYQ9H606 182 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 MRPL40Q9NQ50 206 aaKnown RBP8.16□□□□□ -1.1
USP48-207ENST00000471752 NLGN3Q9NZ94 848 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 MYO1AQ9UBC5 1043 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 IPO11Q9UI26 975 aaKnown RBP8.16□□□□□ -1.1
USP48-207ENST00000471752 AP4E1Q9UPM8 1137 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 OR1A2Q9Y585 309 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 ASH1LQ9NR48 2969 aaKnown RBP8.16□□□□□ -1.1
USP48-207ENST00000471752 FLNCQ14315 2725 aa8.16□□□□□ -1.1
USP48-207ENST00000471752 CHD5Q8TDI0 1954 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 TMEM202A6NGA9 273 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 DFFAO00273 331 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 MAGEC1O60732 1142 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 CSO75390 466 aaKnown RBP8.15□□□□□ -1.1
USP48-207ENST00000471752 LRCH4O75427 683 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 C1QL1O75973 258 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 C6P13671 934 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 FERP16591 822 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 IL4RP24394 825 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 RABIFP47224 123 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 PDX1P52945 283 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 TPI1P60174 286 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 SLC10A7Q0GE19 358 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 RALGDSQ12967 914 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 DPYSQ14117 519 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 INPP5AQ14642 412 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 UGP2Q16851 508 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 ALG11Q2TAA5 492 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 INO80DQ53TQ3 878 aaPredicted RBP8.15□□□□□ -1.1
USP48-207ENST00000471752 PPP6R3Q5H9R7 873 aaPredicted RBP8.15□□□□□ -1.1
USP48-207ENST00000471752 ERMARDQ5T6L9 678 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 HGSNATQ68CP4 663 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 CAVIN1Q6NZI2 390 aaKnown RBP8.15□□□□□ -1.1
USP48-207ENST00000471752 B3GNT8Q7Z7M8 397 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 SRLQ86TD4 932 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 PARGQ86W56 976 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 HID1Q8IV36 788 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 PHACTR4Q8IZ21 702 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 FAM181AQ8N9Y4 354 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 ARHGEF26Q96DR7 871 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 GDAP1L1Q96MZ0 367 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 NRSN2Q9GZP1 204 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 SIRPGQ9P1W8 387 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 UBA2Q9UBT2 640 aaPredicted RBP8.15□□□□□ -1.1
USP48-207ENST00000471752 TPX2Q9ULW0 747 aaKnown RBP8.15□□□□□ -1.1
USP48-207ENST00000471752 HPCAL4Q9UM19 191 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 DAAM1Q9Y4D1 1078 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 PLEKHM1Q9Y4G2 1056 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 ST14Q9Y5Y6 855 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 AHCTF1Q8WYP5 2266 aa8.15□□□□□ -1.1
USP48-207ENST00000471752 KIF26BQ2KJY2 2108 aa8.15□□□□□ -1.11
USP48-207ENST00000471752 COL12A1Q99715 3063 aa8.15□□□□□ -1.11
USP48-207ENST00000471752 A0A1B0GTH6 734 aa8.14□□□□□ -1.11
USP48-207ENST00000471752 TSPAN11A1L157 253 aa8.14□□□□□ -1.11
USP48-207ENST00000471752 EEF2KO00418 725 aaKnown RBP8.14□□□□□ -1.11
USP48-207ENST00000471752 TRAFD1O14545 582 aaPredicted RBP8.14□□□□□ -1.11
USP48-207ENST00000471752 TM7SF2O76062 418 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms