RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 SEMA3CQ99985 751 aa14.65□□□□□ -0.06
SQSTM1-205ENST00000464493 ORAI3Q9BRQ5 295 aa14.65□□□□□ -0.06
SQSTM1-205ENST00000464493 EBF2Q9HAK2 575 aa14.65□□□□□ -0.06
SQSTM1-205ENST00000464493 SEPT10Q9P0V9 454 aa14.65□□□□□ -0.06
SQSTM1-205ENST00000464493 ATP8A1Q9Y2Q0 1164 aa14.65□□□□□ -0.06
SQSTM1-205ENST00000464493 TTLL3Q9Y4R7 772 aa14.65□□□□□ -0.06
SQSTM1-205ENST00000464493 PCDHGC4Q9Y5F7 938 aa14.65□□□□□ -0.06
SQSTM1-205ENST00000464493 GOLGA6L9A6NEM1 432 aa14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 HACD1B0YJ81 288 aa14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 PRR5-ARHGAP8B1AHC4 643 aa14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 TRAFD1O14545 582 aaPredicted RBP14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 AREL1O15033 823 aa14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 HTRA2O43464 458 aaPredicted RBP14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 SOCS5O75159 536 aa14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 CFIP05156 583 aa14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 SERPINF2P08697 491 aa14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 NUDT1P36639 197 aa14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 RPS21P63220 83 aaKnown RBP14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 IRX4P78413 519 aa14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 OTUD4Q01804 1114 aaKnown RBP14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 ZBTB17Q13105 803 aa14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 XRCC4Q13426 336 aa14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 NOMO1Q15155 1222 aa14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 TEX44Q53QW1 395 aa14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 LRRC73Q5JTD7 316 aa14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 TCEAL6Q6IPX3 200 aa14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 KIAA1161Q6NSJ0 714 aa14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 SLC23A3Q6PIS1 610 aa14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 CNTD1Q8N815 330 aa14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 C12orf50Q8NA57 414 aaPredicted RBP14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 ACTL9Q8TC94 416 aa14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 TCEAL3Q969E4 200 aa14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 ECHDC3Q96DC8 303 aa14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 NUSAP1Q9BXS6 441 aaKnown RBP14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 SLC6A14Q9UN76 642 aa14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 DOCK9Q9BZ29 2069 aa14.64□□□□□ -0.07
SQSTM1-205ENST00000464493 TRPM6Q9BX84 2022 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 A0A1W2PQ67 120 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 UPK3BL1B0FP48 263 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 UPK3BL2E5RIL1 263 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 H7C0C1 242 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 MTSS1O43312 755 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 ITIH2P19823 946 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 PTPN3P26045 913 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 ATP5OP48047 213 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 AFF3P51826 1226 aaKnown RBP14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 DSC2Q02487 901 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 NIPAL4Q0D2K0 466 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 ELP6Q0PNE2 266 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 ZNF284Q2VY69 593 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 SETMARQ53H47 684 aaPredicted RBP14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 SEL1L3Q68CR1 1132 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 ZSWIM9Q86XI8 627 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 ARRDC2Q8TBH0 407 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 PDCD6IPQ8WUM4 868 aaKnown RBP14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 KLK6Q92876 244 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 AGAP3Q96P47 875 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 QKIQ96PU8 341 aaKnown RBP eCLIP14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 CEP41Q9BYV8 373 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 CAPN10Q9HC96 672 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 TM9SF3Q9HD45 589 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 PCDH12Q9NPG4 1184 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 TRMT1Q9NXH9 659 aaKnown RBP14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 GGT7Q9UJ14 662 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 ZFR2Q9UPR6 939 aaKnown RBP14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 DMTF1Q9Y222 760 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 ITM2BQ9Y287 266 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 RAI2Q9Y5P3 530 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 SLCO1B1Q9Y6L6 691 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 CFAP54Q96N23 3096 aa14.63□□□□□ -0.07
SQSTM1-205ENST00000464493 KCNK3O14649 394 aa14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 RIOK3O14730 519 aaKnown RBP14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 SLC31A1O15431 190 aa14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 SPINT1O43278 529 aa14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 PLXNA2O75051 1894 aa14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 EIF3EP60228 445 aaKnown RBP14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 RACK1P63244 317 aaKnown RBP14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 WASHC5Q12768 1159 aa14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 TRAF2Q12933 501 aa14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 KLF1Q13351 362 aaPredicted RBP14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 IHHQ14623 411 aa14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 TMEM52BQ4KMG9 183 aa14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 AASDHQ4L235 1098 aaPredicted RBP14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 TMEM259Q4ZIN3 620 aa14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 SLC45A4Q5BKX6 768 aa14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 FAM182AQ5T1J6 154 aa14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 ARMC12Q5T9G4 340 aa14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 SEL1L2Q5TEA6 688 aa14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 ERAP2Q6P179 960 aa14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 ZSCAN30Q86W11 494 aa14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 TTC13Q8NBP0 860 aa14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 CXorf40AQ8TE69 158 aa14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 HTR3CQ8WXA8 447 aa14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 SPOCK2Q92563 424 aa14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 SERAC1Q96JX3 654 aa14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 TEKT5Q96M29 485 aa14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 SLC17A9Q9BYT1 436 aa14.62□□□□□ -0.07
SQSTM1-205ENST00000464493 CARD9Q9H257 536 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms