RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 RPL7AP62424 266 aaKnown RBP16.27■□□□□ 0.2
COL7A1-204ENST00000462475 SERINC3Q13530 473 aa16.27■□□□□ 0.2
COL7A1-204ENST00000462475 CYTH1Q15438 398 aa16.27■□□□□ 0.2
COL7A1-204ENST00000462475 TCEA2Q15560 299 aa16.27■□□□□ 0.2
COL7A1-204ENST00000462475 PARP15Q460N3 678 aa16.27■□□□□ 0.2
COL7A1-204ENST00000462475 FAXCQ5TGI0 409 aa16.27■□□□□ 0.2
COL7A1-204ENST00000462475 DNAJC24Q6P3W2 148 aa16.27■□□□□ 0.2
COL7A1-204ENST00000462475 IGF2-ASQ6U949 168 aa16.27■□□□□ 0.2
COL7A1-204ENST00000462475 NYAP1Q6ZVC0 841 aa16.27■□□□□ 0.2
COL7A1-204ENST00000462475 ZNF843Q8N446 348 aa16.27■□□□□ 0.2
COL7A1-204ENST00000462475 PCMTD1Q96MG8 357 aaPredicted RBP16.27■□□□□ 0.2
COL7A1-204ENST00000462475 C1QTNF7Q9BXJ2 289 aa16.27■□□□□ 0.2
COL7A1-204ENST00000462475 FZD10Q9ULW2 581 aa16.27■□□□□ 0.2
COL7A1-204ENST00000462475 ZNF462Q96JM2 2506 aa16.27■□□□□ 0.2
COL7A1-204ENST00000462475 LGALS16A8MUM7 142 aa16.26■□□□□ 0.19
COL7A1-204ENST00000462475 WASH4PA8MWX3 477 aa16.26■□□□□ 0.19
COL7A1-204ENST00000462475 KLK10O43240 276 aa16.26■□□□□ 0.19
COL7A1-204ENST00000462475 TCEA3O75764 348 aa16.26■□□□□ 0.19
COL7A1-204ENST00000462475 RPIAP49247 311 aa16.26■□□□□ 0.19
COL7A1-204ENST00000462475 UCNP55089 124 aa16.26■□□□□ 0.19
COL7A1-204ENST00000462475 PPARDQ03181 441 aa16.26■□□□□ 0.19
COL7A1-204ENST00000462475 TMEM52BQ4KMG9 183 aa16.26■□□□□ 0.19
COL7A1-204ENST00000462475 PPP1R15BQ5SWA1 713 aa16.26■□□□□ 0.19
COL7A1-204ENST00000462475 ARHGAP40Q5TG30 622 aa16.26■□□□□ 0.19
COL7A1-204ENST00000462475 BROXQ5VW32 411 aa16.26■□□□□ 0.19
COL7A1-204ENST00000462475 UMODL1-AS1Q8N2C9 162 aa16.26■□□□□ 0.19
COL7A1-204ENST00000462475 NEK11Q8NG66 645 aa16.26■□□□□ 0.19
COL7A1-204ENST00000462475 TPCN2Q8NHX9 752 aa16.26■□□□□ 0.19
COL7A1-204ENST00000462475 GLMNQ92990 594 aa16.26■□□□□ 0.19
COL7A1-204ENST00000462475 NAT6Q93015 286 aa16.26■□□□□ 0.19
COL7A1-204ENST00000462475 PRR11Q96HE9 360 aaPredicted RBP16.26■□□□□ 0.19
COL7A1-204ENST00000462475 NCAPGQ9BPX3 1015 aa16.26■□□□□ 0.19
COL7A1-204ENST00000462475 CCDC3Q9BQI4 270 aa16.26■□□□□ 0.19
COL7A1-204ENST00000462475 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.26■□□□□ 0.19
COL7A1-204ENST00000462475 CPEB1Q9BZB8 566 aaKnown RBP16.26■□□□□ 0.19
COL7A1-204ENST00000462475 CATSPERBQ9H7T0 1116 aa16.26■□□□□ 0.19
COL7A1-204ENST00000462475 SYNDIG1Q9H7V2 258 aa16.26■□□□□ 0.19
COL7A1-204ENST00000462475 PDFQ9HBH1 243 aa16.26■□□□□ 0.19
COL7A1-204ENST00000462475 PCDH12Q9NPG4 1184 aa16.26■□□□□ 0.19
COL7A1-204ENST00000462475 TSPAN11A1L157 253 aa16.25■□□□□ 0.19
COL7A1-204ENST00000462475 TOR1BO14657 336 aa16.25■□□□□ 0.19
COL7A1-204ENST00000462475 C6P13671 934 aa16.25■□□□□ 0.19
COL7A1-204ENST00000462475 XPAP23025 273 aaPredicted RBP16.25■□□□□ 0.19
COL7A1-204ENST00000462475 RBMS1P29558 406 aaKnown RBP16.25■□□□□ 0.19
COL7A1-204ENST00000462475 SKOR1P84550 965 aa16.25■□□□□ 0.19
COL7A1-204ENST00000462475 OGDHQ02218 1023 aa16.25■□□□□ 0.19
COL7A1-204ENST00000462475 ELP6Q0PNE2 266 aa16.25■□□□□ 0.19
COL7A1-204ENST00000462475 LRRC14Q15048 493 aa16.25■□□□□ 0.19
COL7A1-204ENST00000462475 ALG11Q2TAA5 492 aa16.25■□□□□ 0.19
COL7A1-204ENST00000462475 WSCD2Q2TBF2 565 aa16.25■□□□□ 0.19
COL7A1-204ENST00000462475 FOXR1Q6PIV2 292 aa16.25■□□□□ 0.19
COL7A1-204ENST00000462475 ZSWIM9Q86XI8 627 aa16.25■□□□□ 0.19
COL7A1-204ENST00000462475 HID1Q8IV36 788 aa16.25■□□□□ 0.19
COL7A1-204ENST00000462475 KYQ8NBH2 561 aa16.25■□□□□ 0.19
COL7A1-204ENST00000462475 PCDH19Q8TAB3 1148 aa16.25■□□□□ 0.19
COL7A1-204ENST00000462475 TSACCQ96A04 125 aaPredicted RBP16.25■□□□□ 0.19
COL7A1-204ENST00000462475 GRAMD1AQ96CP6 724 aa16.25■□□□□ 0.19
COL7A1-204ENST00000462475 SLC46A1Q96NT5 459 aa16.25■□□□□ 0.19
COL7A1-204ENST00000462475 AGPAT1Q99943 283 aa16.25■□□□□ 0.19
COL7A1-204ENST00000462475 CNPY3Q9BT09 278 aa16.25■□□□□ 0.19
COL7A1-204ENST00000462475 LMBRD1Q9NUN5 540 aa16.25■□□□□ 0.19
COL7A1-204ENST00000462475 GPATCH2LQ9NWQ4 482 aa16.25■□□□□ 0.19
COL7A1-204ENST00000462475 SIRPGQ9P1W8 387 aa16.25■□□□□ 0.19
COL7A1-204ENST00000462475 UBA2Q9UBT2 640 aaPredicted RBP16.25■□□□□ 0.19
COL7A1-204ENST00000462475 PADI4Q9UM07 663 aa16.25■□□□□ 0.19
COL7A1-204ENST00000462475 PCDHGA8Q9Y5G5 932 aa16.25■□□□□ 0.19
COL7A1-204ENST00000462475 ANKRD62A6NC57 917 aa16.24■□□□□ 0.19
COL7A1-204ENST00000462475 J3KR12 359 aa16.24■□□□□ 0.19
COL7A1-204ENST00000462475 ERVH48-1M5A8F1 160 aa16.24■□□□□ 0.19
COL7A1-204ENST00000462475 FGF10O15520 208 aaPredicted RBP16.24■□□□□ 0.19
COL7A1-204ENST00000462475 BUB1BO60566 1050 aaPredicted RBP16.24■□□□□ 0.19
COL7A1-204ENST00000462475 PRKCGP05129 697 aa16.24■□□□□ 0.19
COL7A1-204ENST00000462475 PEX5P50542 639 aa16.24■□□□□ 0.19
COL7A1-204ENST00000462475 SUOXP51687 545 aa16.24■□□□□ 0.19
COL7A1-204ENST00000462475 HK3P52790 923 aa16.24■□□□□ 0.19
COL7A1-204ENST00000462475 CFHR1Q03591 330 aa16.24■□□□□ 0.19
COL7A1-204ENST00000462475 NFATC4Q14934 902 aa16.24■□□□□ 0.19
COL7A1-204ENST00000462475 UGP2Q16851 508 aa16.24■□□□□ 0.19
COL7A1-204ENST00000462475 TAF1BQ53T94 588 aaPredicted RBP16.24■□□□□ 0.19
COL7A1-204ENST00000462475 KCTD16Q68DU8 428 aa16.24■□□□□ 0.19
COL7A1-204ENST00000462475 ESRP1Q6NXG1 681 aaKnown RBP16.24■□□□□ 0.19
COL7A1-204ENST00000462475 RBM43Q6ZSC3 357 aaKnown RBP16.24■□□□□ 0.19
COL7A1-204ENST00000462475 DNAAF5Q86Y56 855 aa16.24■□□□□ 0.19
COL7A1-204ENST00000462475 FSTL5Q8N475 847 aaPredicted RBP16.24■□□□□ 0.19
COL7A1-204ENST00000462475 ARL10Q8N8L6 244 aa16.24■□□□□ 0.19
COL7A1-204ENST00000462475 CELF6Q96J87 481 aaKnown RBP16.24■□□□□ 0.19
COL7A1-204ENST00000462475 DPH1Q9BZG8 443 aa16.24■□□□□ 0.19
COL7A1-204ENST00000462475 SUV39H2Q9H5I1 410 aa16.24■□□□□ 0.19
COL7A1-204ENST00000462475 LRRC19Q9H756 370 aa16.24■□□□□ 0.19
COL7A1-204ENST00000462475 GULP1Q9UBP9 304 aa16.24■□□□□ 0.19
COL7A1-204ENST00000462475 LIMA1Q9UHB6 759 aaKnown RBP16.24■□□□□ 0.19
COL7A1-204ENST00000462475 RABGEF1Q9UJ41 708 aa16.24■□□□□ 0.19
COL7A1-204ENST00000462475 DOLKQ9UPQ8 538 aa16.24■□□□□ 0.19
COL7A1-204ENST00000462475 OR1A2Q9Y585 309 aa16.24■□□□□ 0.19
COL7A1-204ENST00000462475 SETXQ7Z333 2677 aaKnown RBP16.23■□□□□ 0.19
COL7A1-204ENST00000462475 RP1P56715 2156 aa16.23■□□□□ 0.19
COL7A1-204ENST00000462475 CDRT15L2A8MXV6 281 aa16.23■□□□□ 0.19
COL7A1-204ENST00000462475 NTN3O00634 580 aaPredicted RBP16.23■□□□□ 0.19
COL7A1-204ENST00000462475 PRAMEF11O60813 436 aa16.23■□□□□ 0.19
COL7A1-204ENST00000462475 PCCBP05166 539 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms