RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	ACTN2	P35609	894 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	ATXN3	P54252	364 aa	Predicted RBP	10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	AASDH	Q4L235	1098 aa	Predicted RBP	10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	LEKR1	Q6ZMV7	388 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	PRR23C	Q6ZRP0	262 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	TTC7B	Q86TV6	843 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	CACUL1	Q86Y37	369 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	SLC41A1	Q8IVJ1	513 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	MFSD2A	Q8NA29	543 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	C6orf106	Q9H6K1	298 aa	Predicted RBP	10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	KLHL8	Q9P2G9	620 aa	Predicted RBP	10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	PPIL1	Q9Y3C6	166 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	NUP205	Q92621	2012 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	MARCKSL1	P49006	195 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	EPHB1	P54762	984 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	STAT4	Q14765	748 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	ADAT2	Q7Z6V5	191 aa	Known RBP	10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	IFT43	Q96FT9	208 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	TEKT5	Q96M29	485 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	CDH19	Q9H159	772 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	GOLPH3	Q9H4A6	298 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	GLOD4	Q9HC38	313 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	HACD3	Q9P035	362 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	TRIM10	Q9UDY6	481 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	CEP192	Q8TEP8	1941 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	RGSL1	A5PLK6	1076 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	TM7SF2	O76062	418 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	PGLS	O95336	258 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	EPO	P01588	193 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	TIMP2	P16035	220 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	STIP1	P31948	543 aa	Known RBP	10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	VIPR1	P32241	457 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	MPP3	Q13368	585 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	UGP2	Q16851	508 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	P3H1	Q32P28	736 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	DARS2	Q6PI48	645 aa	Known RBP	10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	ACTL9	Q8TC94	416 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	ALG3	Q92685	438 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	RAPGEFL1	Q9UHV5	662 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947	PCDHGB2	Q9Y5G2	931 aa		10.79	□□□□□ -0.68
UBR4-208	ENST00000459947		A0A1W2PQU0	124 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	VILL	O15195	856 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	TUBB4A	P04350	444 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	RBP3	P10745	1247 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	PYGM	P11217	842 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	TEAD1	P28347	426 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	HOXD11	P31277	338 aa	Predicted RBP	10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	OTUD4	Q01804	1114 aa	Known RBP	10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	SLC10A2	Q12908	348 aa	Predicted RBP	10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	ARHGEF7	Q14155	803 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	SLC13A5	Q86YT5	568 aa	Predicted RBP	10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	BIRC7	Q96CA5	298 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	FCRL5	Q96RD9	977 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	C1QTNF2	Q9BXJ5	285 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	AAR2	Q9Y312	384 aa	Known RBP	10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	RAI2	Q9Y5P3	530 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	HLA-DQB2	P05538	268 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	TMEM259	Q4ZIN3	620 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	TRIM61	Q5EBN2	209 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	DRICH1	Q6PGQ1	229 aa	Predicted RBP	10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	ERVMER34-1	Q9H9K5	563 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	SEPT10	Q9P0V9	454 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	FAM153A	Q9UHL3	310 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	COL6A3	P12111	3177 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947		A6NNZ2	444 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	FPGT	O14772	594 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	TCP1	P17987	556 aa	Known RBP	10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	PTPN3	P26045	913 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	YPEL5	P62699	121 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	PTK2B	Q14289	1009 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	SUZ12	Q15022	739 aa	Known RBP	10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	KYAT3	Q6YP21	454 aa	Known RBP	10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	ZNF765	Q7L2R6	523 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	ARMCX6	Q7L4S7	300 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	IMP4	Q96G21	291 aa	Known RBP	10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	EXOC2	Q96KP1	924 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	TRABD	Q9H4I3	376 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	CAPN10	Q9HC96	672 aa		10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	TTC7A	Q9ULT0	858 aa	Predicted RBP	10.78	□□□□□ -0.68
UBR4-208	ENST00000459947	GOLGA6L10	A0A0M3HER8	536 aa		10.77	□□□□□ -0.68
UBR4-208	ENST00000459947	PDE2A	O00408	941 aa	Predicted RBP	10.77	□□□□□ -0.68
UBR4-208	ENST00000459947	KCNK3	O14649	394 aa		10.77	□□□□□ -0.68
UBR4-208	ENST00000459947	CFI	P05156	583 aa		10.77	□□□□□ -0.68
UBR4-208	ENST00000459947	IGHV4-34	P06331	123 aa		10.77	□□□□□ -0.68
UBR4-208	ENST00000459947	CD38	P28907	300 aa		10.77	□□□□□ -0.68
UBR4-208	ENST00000459947	MMP12	P39900	470 aa		10.77	□□□□□ -0.68
UBR4-208	ENST00000459947	ABL2	P42684	1182 aa		10.77	□□□□□ -0.68
UBR4-208	ENST00000459947	RABIF	P47224	123 aa		10.77	□□□□□ -0.68
UBR4-208	ENST00000459947	SPEM2	Q0P670	501 aa		10.77	□□□□□ -0.68
UBR4-208	ENST00000459947	LPAL2	Q16609	132 aa		10.77	□□□□□ -0.68
UBR4-208	ENST00000459947	HS1BP3	Q53T59	392 aa		10.77	□□□□□ -0.68
UBR4-208	ENST00000459947	ZDHHC20	Q5W0Z9	365 aa		10.77	□□□□□ -0.68
UBR4-208	ENST00000459947	NLRP8	Q86W28	1048 aa		10.77	□□□□□ -0.68
UBR4-208	ENST00000459947	RUNDC3B	Q96NL0	473 aa		10.77	□□□□□ -0.68
UBR4-208	ENST00000459947	LGMN	Q99538	433 aa		10.77	□□□□□ -0.68
UBR4-208	ENST00000459947	HEMGN	Q9BXL5	484 aa		10.77	□□□□□ -0.68
UBR4-208	ENST00000459947	SLC17A9	Q9BYT1	436 aa		10.77	□□□□□ -0.68
UBR4-208	ENST00000459947	MIR1-1HG	Q9H1L0	117 aa		10.77	□□□□□ -0.68
UBR4-208	ENST00000459947	NOD2	Q9HC29	1040 aa		10.77	□□□□□ -0.68
UBR4-208	ENST00000459947	TMEM9B	Q9NQ34	198 aa		10.77	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms