RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 CSRP2Q16527 193 aa28.23■■■□□ 2.11
SMARCC1-203ENST00000454240 CFAP58Q5T655 872 aa28.23■■■□□ 2.11
SMARCC1-203ENST00000454240 SEL1L2Q5TEA6 688 aa28.23■■■□□ 2.11
SMARCC1-203ENST00000454240 TTC13Q8NBP0 860 aa28.23■■■□□ 2.11
SMARCC1-203ENST00000454240 SNX19Q92543 992 aa28.23■■■□□ 2.11
SMARCC1-203ENST00000454240 CEP41Q9BYV8 373 aa28.23■■■□□ 2.11
SMARCC1-203ENST00000454240 SEPT10Q9P0V9 454 aa28.23■■■□□ 2.11
SMARCC1-203ENST00000454240 TTLL3Q9Y4R7 772 aa28.23■■■□□ 2.11
SMARCC1-203ENST00000454240 A0A1W2PPC4 97 aa28.22■■■□□ 2.11
SMARCC1-203ENST00000454240 A0A1W2PQ67 120 aa28.22■■■□□ 2.11
SMARCC1-203ENST00000454240 TCRBV7S2A1N4TA0A589 114 aa28.22■■■□□ 2.11
SMARCC1-203ENST00000454240 USP27XA6NNY8 438 aa28.22■■■□□ 2.11
SMARCC1-203ENST00000454240 H7C0C1 242 aa28.22■■■□□ 2.11
SMARCC1-203ENST00000454240 KCNK3O14649 394 aa28.22■■■□□ 2.11
SMARCC1-203ENST00000454240 TSPAN6O43657 245 aa28.22■■■□□ 2.11
SMARCC1-203ENST00000454240 PCDH8O95206 1070 aa28.22■■■□□ 2.11
SMARCC1-203ENST00000454240 ATP5OP48047 213 aa28.22■■■□□ 2.11
SMARCC1-203ENST00000454240 TRAF2Q12933 501 aa28.22■■■□□ 2.11
SMARCC1-203ENST00000454240 FAM182AQ5T1J6 154 aa28.22■■■□□ 2.11
SMARCC1-203ENST00000454240 HORMAD1Q86X24 394 aa28.22■■■□□ 2.11
SMARCC1-203ENST00000454240 GPR161Q8N6U8 529 aaKnown RBP28.22■■■□□ 2.11
SMARCC1-203ENST00000454240 HTR3CQ8WXA8 447 aa28.22■■■□□ 2.11
SMARCC1-203ENST00000454240 AGAP3Q96P47 875 aa28.22■■■□□ 2.11
SMARCC1-203ENST00000454240 SMOC1Q9H4F8 434 aa28.22■■■□□ 2.11
SMARCC1-203ENST00000454240 SUSD2Q9UGT4 822 aa28.22■■■□□ 2.11
SMARCC1-203ENST00000454240 ZFR2Q9UPR6 939 aaKnown RBP28.22■■■□□ 2.11
SMARCC1-203ENST00000454240 JRKLQ9Y4A0 524 aa28.22■■■□□ 2.11
SMARCC1-203ENST00000454240 LRRK1Q38SD2 2015 aa28.21■■■□□ 2.11
SMARCC1-203ENST00000454240 A0A1W2PQU0 124 aa28.21■■■□□ 2.11
SMARCC1-203ENST00000454240 UPK3BL1B0FP48 263 aa28.21■■■□□ 2.11
SMARCC1-203ENST00000454240 UPK3BL2E5RIL1 263 aa28.21■■■□□ 2.11
SMARCC1-203ENST00000454240 RBP3P10745 1247 aa28.21■■■□□ 2.11
SMARCC1-203ENST00000454240 ITIH2P19823 946 aa28.21■■■□□ 2.11
SMARCC1-203ENST00000454240 EIF3EP60228 445 aaKnown RBP28.21■■■□□ 2.11
SMARCC1-203ENST00000454240 POLR2LP62875 67 aaKnown RBP28.21■■■□□ 2.11
SMARCC1-203ENST00000454240 DUOXA1Q1HG43 343 aa28.21■■■□□ 2.11
SMARCC1-203ENST00000454240 LRRC73Q5JTD7 316 aa28.21■■■□□ 2.11
SMARCC1-203ENST00000454240 RABEPKQ7Z6M1 372 aa28.21■■■□□ 2.11
SMARCC1-203ENST00000454240 PRPF39Q86UA1 669 aaKnown RBP28.21■■■□□ 2.11
SMARCC1-203ENST00000454240 CEP76Q8TAP6 659 aa28.21■■■□□ 2.11
SMARCC1-203ENST00000454240 FEM1CQ96JP0 617 aa28.21■■■□□ 2.11
SMARCC1-203ENST00000454240 TEKT5Q96M29 485 aa28.21■■■□□ 2.11
SMARCC1-203ENST00000454240 FAM118BQ9BPY3 351 aa28.21■■■□□ 2.11
SMARCC1-203ENST00000454240 MIR1-1HGQ9H1L0 117 aa28.21■■■□□ 2.11
SMARCC1-203ENST00000454240 GGT7Q9UJ14 662 aa28.21■■■□□ 2.11
SMARCC1-203ENST00000454240 ITM2BQ9Y287 266 aa28.21■■■□□ 2.11
SMARCC1-203ENST00000454240 SLCO1B1Q9Y6L6 691 aa28.21■■■□□ 2.11
SMARCC1-203ENST00000454240 PATE3B3GLJ2 98 aa28.2■■■□□ 2.1
SMARCC1-203ENST00000454240 MMP2P08253 660 aa28.2■■■□□ 2.1
SMARCC1-203ENST00000454240 SERPINF2P08697 491 aa28.2■■■□□ 2.1
SMARCC1-203ENST00000454240 GNSP15586 552 aa28.2■■■□□ 2.1
SMARCC1-203ENST00000454240 XPAP23025 273 aaPredicted RBP28.2■■■□□ 2.1
SMARCC1-203ENST00000454240 RBL1P28749 1068 aa28.2■■■□□ 2.1
SMARCC1-203ENST00000454240 ZNF284Q2VY69 593 aa28.2■■■□□ 2.1
SMARCC1-203ENST00000454240 TMEM259Q4ZIN3 620 aa28.2■■■□□ 2.1
SMARCC1-203ENST00000454240 ZNF569Q5MCW4 686 aa28.2■■■□□ 2.1
SMARCC1-203ENST00000454240 KIAA1161Q6NSJ0 714 aa28.2■■■□□ 2.1
SMARCC1-203ENST00000454240 SLC23A3Q6PIS1 610 aa28.2■■■□□ 2.1
SMARCC1-203ENST00000454240 SLC13A5Q86YT5 568 aaPredicted RBP28.2■■■□□ 2.1
SMARCC1-203ENST00000454240 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP28.2■■■□□ 2.1
SMARCC1-203ENST00000454240 VAT1Q99536 393 aa28.2■■■□□ 2.1
SMARCC1-203ENST00000454240 PCDH12Q9NPG4 1184 aa28.2■■■□□ 2.1
SMARCC1-203ENST00000454240 RAI2Q9Y5P3 530 aa28.2■■■□□ 2.1
SMARCC1-203ENST00000454240 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP28.2■■■□□ 2.12e-6■■□□□ 12.8
SMARCC1-203ENST00000454240 ZNF292O60281 2723 aa28.2■■■□□ 2.1
SMARCC1-203ENST00000454240 LAMA1P25391 3075 aa28.2■■■□□ 2.1
SMARCC1-203ENST00000454240 A0A1B0GTW7 788 aa28.19■■■□□ 2.1
SMARCC1-203ENST00000454240 RIOK3O14730 519 aaKnown RBP28.19■■■□□ 2.1
SMARCC1-203ENST00000454240 BCAT2O15382 392 aaPredicted RBP28.19■■■□□ 2.1
SMARCC1-203ENST00000454240 FZD6O60353 706 aa28.19■■■□□ 2.1
SMARCC1-203ENST00000454240 MAT2AP31153 395 aaKnown RBP28.19■■■□□ 2.1
SMARCC1-203ENST00000454240 NUDT1P36639 197 aa28.19■■■□□ 2.1
SMARCC1-203ENST00000454240 RPS21P63220 83 aaKnown RBP28.19■■■□□ 2.1
SMARCC1-203ENST00000454240 ELP6Q0PNE2 266 aa28.19■■■□□ 2.1
SMARCC1-203ENST00000454240 ZSCAN30Q86W11 494 aa28.19■■■□□ 2.1
SMARCC1-203ENST00000454240 CDKL3Q8IVW4 592 aaPredicted RBP28.19■■■□□ 2.1
SMARCC1-203ENST00000454240 SLC35F6Q8N357 371 aa28.19■■■□□ 2.1
SMARCC1-203ENST00000454240 ZCCHC9Q8N567 271 aaKnown RBP28.19■■■□□ 2.1
SMARCC1-203ENST00000454240 IMP4Q96G21 291 aaKnown RBP28.19■■■□□ 2.1
SMARCC1-203ENST00000454240 SLC25A51Q9H1U9 297 aa28.19■■■□□ 2.1
SMARCC1-203ENST00000454240 C10orf88Q9H8K7 445 aa28.19■■■□□ 2.1
SMARCC1-203ENST00000454240 R3HDM2Q9Y2K5 976 aaKnown RBP28.19■■■□□ 2.1
SMARCC1-203ENST00000454240 PCDHB9Q9Y5E1 797 aa28.19■■■□□ 2.1
SMARCC1-203ENST00000454240 ADAMTS9Q9P2N4 1935 aa28.19■■■□□ 2.1
SMARCC1-203ENST00000454240 NEMP1O14524 444 aa28.18■■■□□ 2.1
SMARCC1-203ENST00000454240 ENC1O14682 589 aa28.18■■■□□ 2.1
SMARCC1-203ENST00000454240 KHNYNO15037 678 aaKnown RBP28.18■■■□□ 2.1
SMARCC1-203ENST00000454240 KIF5CO60282 957 aa28.18■■■□□ 2.1
SMARCC1-203ENST00000454240 PGLSO95336 258 aa28.18■■■□□ 2.1
SMARCC1-203ENST00000454240 HOXD11P31277 338 aaPredicted RBP28.18■■■□□ 2.1
SMARCC1-203ENST00000454240 SKOR1P84550 965 aa28.18■■■□□ 2.1
SMARCC1-203ENST00000454240 SF3A2Q15428 464 aaKnown RBP28.18■■■□□ 2.1
SMARCC1-203ENST00000454240 TMEM52BQ4KMG9 183 aa28.18■■■□□ 2.1
SMARCC1-203ENST00000454240 TRIM61Q5EBN2 209 aa28.18■■■□□ 2.1
SMARCC1-203ENST00000454240 ARMC12Q5T9G4 340 aa28.18■■■□□ 2.1
SMARCC1-203ENST00000454240 SEL1L3Q68CR1 1132 aa28.18■■■□□ 2.1
SMARCC1-203ENST00000454240 PDCD6IPQ8WUM4 868 aaKnown RBP28.18■■■□□ 2.1
SMARCC1-203ENST00000454240 GLOD4Q9HC38 313 aa28.18■■■□□ 2.1
SMARCC1-203ENST00000454240 CAPN10Q9HC96 672 aa28.18■■■□□ 2.1
SMARCC1-203ENST00000454240 TM9SF3Q9HD45 589 aa28.18■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms