RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 A0A1W2PPC4 97 aa20.15■□□□□ 0.82
COL9A3-202ENST00000452372 BCAT2O15382 392 aaPredicted RBP20.15■□□□□ 0.82
COL9A3-202ENST00000452372 PIGNO95427 931 aa20.15■□□□□ 0.82
COL9A3-202ENST00000452372 FAM193AP78312 1265 aa20.15■□□□□ 0.82
COL9A3-202ENST00000452372 ADCY2Q08462 1091 aa20.15■□□□□ 0.82
COL9A3-202ENST00000452372 PPIDQ08752 370 aaKnown RBP20.15■□□□□ 0.82
COL9A3-202ENST00000452372 FOXC1Q12948 553 aa20.15■□□□□ 0.82
COL9A3-202ENST00000452372 LLGL1Q15334 1064 aa20.15■□□□□ 0.82
COL9A3-202ENST00000452372 RALGPS1Q5JS13 557 aa20.15■□□□□ 0.82
COL9A3-202ENST00000452372 KAZNQ674X7 775 aa20.15■□□□□ 0.82
COL9A3-202ENST00000452372 NPNTQ6UXI9 565 aa20.15■□□□□ 0.82
COL9A3-202ENST00000452372 BZW1Q7L1Q6 419 aaKnown RBP20.15■□□□□ 0.82
COL9A3-202ENST00000452372 TTC7BQ86TV6 843 aa20.15■□□□□ 0.82
COL9A3-202ENST00000452372 CAMK1DQ8IU85 385 aa20.15■□□□□ 0.82
COL9A3-202ENST00000452372 CCDC13Q8IYE1 715 aa20.15■□□□□ 0.82
COL9A3-202ENST00000452372 ZCCHC9Q8N567 271 aaKnown RBP20.15■□□□□ 0.82
COL9A3-202ENST00000452372 MINDY1Q8N5J2 469 aa20.15■□□□□ 0.82
COL9A3-202ENST00000452372 OLFM3Q96PB7 478 aa20.15■□□□□ 0.82
COL9A3-202ENST00000452372 NUDCD1Q96RS6 583 aa20.15■□□□□ 0.82
COL9A3-202ENST00000452372 LGMNQ99538 433 aa20.15■□□□□ 0.82
COL9A3-202ENST00000452372 TMEM121BQ9BXQ6 578 aaPredicted RBP20.15■□□□□ 0.82
COL9A3-202ENST00000452372 BRD8Q9H0E9 1235 aa20.15■□□□□ 0.82
COL9A3-202ENST00000452372 DNAAF2Q9NVR5 837 aaKnown RBP20.15■□□□□ 0.82
COL9A3-202ENST00000452372 AMACRQ9UHK6 382 aa20.15■□□□□ 0.82
COL9A3-202ENST00000452372 EFR3BQ9Y2G0 817 aa20.15■□□□□ 0.82
COL9A3-202ENST00000452372 CAPN6Q9Y6Q1 641 aa20.15■□□□□ 0.82
COL9A3-202ENST00000452372 TRPM6Q9BX84 2022 aa20.15■□□□□ 0.82
COL9A3-202ENST00000452372 TSPAN11A1L157 253 aa20.14■□□□□ 0.81
COL9A3-202ENST00000452372 MIF4GDA9UHW6 222 aaKnown RBP20.14■□□□□ 0.81
COL9A3-202ENST00000452372 RNGTTO60942 597 aaKnown RBP20.14■□□□□ 0.81
COL9A3-202ENST00000452372 PCDH8O95206 1070 aa20.14■□□□□ 0.81
COL9A3-202ENST00000452372 CCNB1P14635 433 aa20.14■□□□□ 0.81
COL9A3-202ENST00000452372 TIMP2P16035 220 aa20.14■□□□□ 0.81
COL9A3-202ENST00000452372 TGM2P21980 687 aa20.14■□□□□ 0.81
COL9A3-202ENST00000452372 SERPINA4P29622 427 aa20.14■□□□□ 0.81
COL9A3-202ENST00000452372 NUDT1P36639 197 aa20.14■□□□□ 0.81
COL9A3-202ENST00000452372 PPP2CBP62714 309 aa20.14■□□□□ 0.81
COL9A3-202ENST00000452372 PPP2CAP67775 309 aa20.14■□□□□ 0.81
COL9A3-202ENST00000452372 BCL2L1Q07817 233 aa20.14■□□□□ 0.81
COL9A3-202ENST00000452372 PRPF39Q86UA1 669 aaKnown RBP20.14■□□□□ 0.81
COL9A3-202ENST00000452372 HORMAD1Q86X24 394 aa20.14■□□□□ 0.81
COL9A3-202ENST00000452372 LRRN4Q8WUT4 740 aa20.14■□□□□ 0.81
COL9A3-202ENST00000452372 UBE2Q2Q8WVN8 375 aa20.14■□□□□ 0.81
COL9A3-202ENST00000452372 ALG3Q92685 438 aa20.14■□□□□ 0.81
COL9A3-202ENST00000452372 NSMCE3Q96MG7 304 aa20.14■□□□□ 0.81
COL9A3-202ENST00000452372 NT5MQ9NPB1 228 aa20.14■□□□□ 0.81
COL9A3-202ENST00000452372 RBM22Q9NW64 420 aaKnown RBP eCLIP20.14■□□□□ 0.812e-6■■■■□ 23.8
COL9A3-202ENST00000452372 SLCO1B1Q9Y6L6 691 aa20.14■□□□□ 0.81
COL9A3-202ENST00000452372 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.13■□□□□ 0.81
COL9A3-202ENST00000452372 SPAARA0A1B0GVQ0 90 aa20.13■□□□□ 0.81
COL9A3-202ENST00000452372 A0A1W2PQU0 124 aa20.13■□□□□ 0.81
COL9A3-202ENST00000452372 PPP1R12AO14974 1030 aaPredicted RBP20.13■□□□□ 0.81
COL9A3-202ENST00000452372 AREL1O15033 823 aa20.13■□□□□ 0.81
COL9A3-202ENST00000452372 TSPAN6O43657 245 aa20.13■□□□□ 0.81
COL9A3-202ENST00000452372 FTCDO95954 541 aa20.13■□□□□ 0.81
COL9A3-202ENST00000452372 PTPN7P35236 360 aa20.13■□□□□ 0.81
COL9A3-202ENST00000452372 ABL2P42684 1182 aa20.13■□□□□ 0.81
COL9A3-202ENST00000452372 SUOXP51687 545 aa20.13■□□□□ 0.81
COL9A3-202ENST00000452372 MAXP61244 160 aa20.13■□□□□ 0.81
COL9A3-202ENST00000452372 BRAT1Q6PJG6 821 aa20.13■□□□□ 0.81
COL9A3-202ENST00000452372 BBS12Q6ZW61 710 aa20.13■□□□□ 0.81
COL9A3-202ENST00000452372 UBL4BQ8N7F7 174 aa20.13■□□□□ 0.81
COL9A3-202ENST00000452372 ECHDC3Q96DC8 303 aa20.13■□□□□ 0.81
COL9A3-202ENST00000452372 FEM1CQ96JP0 617 aa20.13■□□□□ 0.81
COL9A3-202ENST00000452372 PDLIM2Q96JY6 352 aa20.13■□□□□ 0.81
COL9A3-202ENST00000452372 TM9SF3Q9HD45 589 aa20.13■□□□□ 0.81
COL9A3-202ENST00000452372 SCUBE2Q9NQ36 999 aa20.13■□□□□ 0.81
COL9A3-202ENST00000452372 SAE1Q9UBE0 346 aaPredicted RBP20.13■□□□□ 0.81
COL9A3-202ENST00000452372 PLXNA2O75051 1894 aa20.12■□□□□ 0.81
COL9A3-202ENST00000452372 TTC24A2A3L6 582 aaPredicted RBP20.12■□□□□ 0.81
COL9A3-202ENST00000452372 C1QTNF9BB2RNN3 333 aa20.12■□□□□ 0.81
COL9A3-202ENST00000452372 TRAFD1O14545 582 aaPredicted RBP20.12■□□□□ 0.81
COL9A3-202ENST00000452372 OPHN1O60890 802 aa20.12■□□□□ 0.81
COL9A3-202ENST00000452372 PROS1P07225 676 aa20.12■□□□□ 0.81
COL9A3-202ENST00000452372 C1QTNF9P0C862 333 aa20.12■□□□□ 0.81
COL9A3-202ENST00000452372 PYGMP11217 842 aa20.12■□□□□ 0.81
COL9A3-202ENST00000452372 MAT2AP31153 395 aaKnown RBP20.12■□□□□ 0.81
COL9A3-202ENST00000452372 CETN2P41208 172 aa20.12■□□□□ 0.81
COL9A3-202ENST00000452372 AFF3P51826 1226 aaKnown RBP20.12■□□□□ 0.81
COL9A3-202ENST00000452372 RACK1P63244 317 aaKnown RBP20.12■□□□□ 0.81
COL9A3-202ENST00000452372 BNC1Q01954 994 aa20.12■□□□□ 0.81
COL9A3-202ENST00000452372 AP1B1Q10567 949 aa20.12■□□□□ 0.81
COL9A3-202ENST00000452372 GSE1Q14687 1217 aa20.12■□□□□ 0.81
COL9A3-202ENST00000452372 UGP2Q16851 508 aa20.12■□□□□ 0.81
COL9A3-202ENST00000452372 SETMARQ53H47 684 aaPredicted RBP20.12■□□□□ 0.81
COL9A3-202ENST00000452372 ALG1LQ6GMV1 187 aa20.12■□□□□ 0.81
COL9A3-202ENST00000452372 P3H4Q92791 437 aa20.12■□□□□ 0.81
COL9A3-202ENST00000452372 HES6Q96HZ4 224 aa20.12■□□□□ 0.81
COL9A3-202ENST00000452372 SCNM1Q9BWG6 230 aa20.12■□□□□ 0.81
COL9A3-202ENST00000452372 HEMGNQ9BXL5 484 aa20.12■□□□□ 0.81
COL9A3-202ENST00000452372 OSBPL8Q9BZF1 889 aa20.12■□□□□ 0.81
COL9A3-202ENST00000452372 POLR1EQ9GZS1 481 aaKnown RBP20.12■□□□□ 0.81
COL9A3-202ENST00000452372 NOD2Q9HC29 1040 aa20.12■□□□□ 0.81
COL9A3-202ENST00000452372 LZTFL1Q9NQ48 299 aa20.12■□□□□ 0.81
COL9A3-202ENST00000452372 HAUS2Q9NVX0 235 aa20.12■□□□□ 0.81
COL9A3-202ENST00000452372 PACSIN2Q9UNF0 486 aaPredicted RBP20.12■□□□□ 0.81
COL9A3-202ENST00000452372 ZFR2Q9UPR6 939 aaKnown RBP20.12■□□□□ 0.81
COL9A3-202ENST00000452372 DMTF1Q9Y222 760 aa20.12■□□□□ 0.81
COL9A3-202ENST00000452372 PPP2R2CQ9Y2T4 447 aa20.12■□□□□ 0.81
COL9A3-202ENST00000452372 WDFY3Q8IZQ1 3526 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms