RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 CENPTQ96BT3 561 aa14.67□□□□□ -0.06
SDC1-204ENST00000429035 CELF6Q96J87 481 aaKnown RBP14.67□□□□□ -0.06
SDC1-204ENST00000429035 CPNE5Q9HCH3 593 aa14.67□□□□□ -0.06
SDC1-204ENST00000429035 LHX3Q9UBR4 397 aa14.67□□□□□ -0.06
SDC1-204ENST00000429035 PNMA8BQ9ULN7 279 aaPredicted RBP14.67□□□□□ -0.06
SDC1-204ENST00000429035 FZD10Q9ULW2 581 aa14.67□□□□□ -0.06
SDC1-204ENST00000429035 DAAM1Q9Y4D1 1078 aa14.67□□□□□ -0.06
SDC1-204ENST00000429035 EME2A4GXA9 379 aaPredicted RBP14.66□□□□□ -0.06
SDC1-204ENST00000429035 SIGLEC16A6NMB1 481 aa14.66□□□□□ -0.06
SDC1-204ENST00000429035 TPP1O14773 563 aa14.66□□□□□ -0.06
SDC1-204ENST00000429035 ZIC2O95409 532 aaPredicted RBP14.66□□□□□ -0.06
SDC1-204ENST00000429035 C6P13671 934 aa14.66□□□□□ -0.06
SDC1-204ENST00000429035 TIMP2P16035 220 aa14.66□□□□□ -0.06
SDC1-204ENST00000429035 TSHRP16473 764 aa14.66□□□□□ -0.06
SDC1-204ENST00000429035 CDK11BP21127 795 aaKnown RBP14.66□□□□□ -0.06
SDC1-204ENST00000429035 LSSP48449 732 aa14.66□□□□□ -0.06
SDC1-204ENST00000429035 ZNF143P52747 638 aaPredicted RBP14.66□□□□□ -0.06
SDC1-204ENST00000429035 RPL7AP62424 266 aaKnown RBP14.66□□□□□ -0.06
SDC1-204ENST00000429035 YPEL5P62699 121 aa14.66□□□□□ -0.06
SDC1-204ENST00000429035 MYL5Q02045 173 aa14.66□□□□□ -0.06
SDC1-204ENST00000429035 ELP6Q0PNE2 266 aa14.66□□□□□ -0.06
SDC1-204ENST00000429035 SPIDRQ14159 915 aa14.66□□□□□ -0.06
SDC1-204ENST00000429035 PARP15Q460N3 678 aa14.66□□□□□ -0.06
SDC1-204ENST00000429035 ERAP2Q6P179 960 aa14.66□□□□□ -0.06
SDC1-204ENST00000429035 SASS6Q6UVJ0 657 aa14.66□□□□□ -0.06
SDC1-204ENST00000429035 ENPP7Q6UWV6 458 aa14.66□□□□□ -0.06
SDC1-204ENST00000429035 DNAAF5Q86Y56 855 aa14.66□□□□□ -0.06
SDC1-204ENST00000429035 KYQ8NBH2 561 aa14.66□□□□□ -0.06
SDC1-204ENST00000429035 PCDH19Q8TAB3 1148 aa14.66□□□□□ -0.06
SDC1-204ENST00000429035 TSACCQ96A04 125 aaPredicted RBP14.66□□□□□ -0.06
SDC1-204ENST00000429035 AGPAT1Q99943 283 aa14.66□□□□□ -0.06
SDC1-204ENST00000429035 CCDC3Q9BQI4 270 aa14.66□□□□□ -0.06
SDC1-204ENST00000429035 ENTPD2Q9Y5L3 495 aa14.66□□□□□ -0.06
SDC1-204ENST00000429035 PMS2P1A4D2B8 440 aa14.65□□□□□ -0.06
SDC1-204ENST00000429035 TMCO5BA8MYB1 307 aa14.65□□□□□ -0.06
SDC1-204ENST00000429035 LMO7DNF2Z398 122 aa14.65□□□□□ -0.06
SDC1-204ENST00000429035 CASC3O15234 703 aaKnown RBP14.65□□□□□ -0.06
SDC1-204ENST00000429035 FGF10O15520 208 aaPredicted RBP14.65□□□□□ -0.06
SDC1-204ENST00000429035 ATMINO43313 823 aaPredicted RBP14.65□□□□□ -0.06
SDC1-204ENST00000429035 LZTS3O60299 673 aaPredicted RBP14.65□□□□□ -0.06
SDC1-204ENST00000429035 C1QL1O75973 258 aa14.65□□□□□ -0.06
SDC1-204ENST00000429035 HTR1BP28222 390 aa14.65□□□□□ -0.06
SDC1-204ENST00000429035 YBEYP58557 167 aaPredicted RBP14.65□□□□□ -0.06
SDC1-204ENST00000429035 ERVPABLB-1P60509 514 aa14.65□□□□□ -0.06
SDC1-204ENST00000429035 C1QBPQ07021 282 aaKnown RBP14.65□□□□□ -0.06
SDC1-204ENST00000429035 SERINC3Q13530 473 aa14.65□□□□□ -0.06
SDC1-204ENST00000429035 LRRC14Q15048 493 aa14.65□□□□□ -0.06
SDC1-204ENST00000429035 CYTH1Q15438 398 aa14.65□□□□□ -0.06
SDC1-204ENST00000429035 INO80DQ53TQ3 878 aaPredicted RBP14.65□□□□□ -0.06
SDC1-204ENST00000429035 TPCN2Q8NHX9 752 aa14.65□□□□□ -0.06
SDC1-204ENST00000429035 HIC2Q96JB3 615 aa14.65□□□□□ -0.06
SDC1-204ENST00000429035 CNPY3Q9BT09 278 aa14.65□□□□□ -0.06
SDC1-204ENST00000429035 BOCQ9BWV1 1114 aa14.65□□□□□ -0.06
SDC1-204ENST00000429035 CLPBQ9H078 707 aa14.65□□□□□ -0.06
SDC1-204ENST00000429035 PCDH12Q9NPG4 1184 aa14.65□□□□□ -0.06
SDC1-204ENST00000429035 ASCL3Q9NQ33 180 aa14.65□□□□□ -0.06
SDC1-204ENST00000429035 LMBRD1Q9NUN5 540 aa14.65□□□□□ -0.06
SDC1-204ENST00000429035 DKK3Q9UBP4 350 aa14.65□□□□□ -0.06
SDC1-204ENST00000429035 KLQ9UEF7 1012 aa14.65□□□□□ -0.06
SDC1-204ENST00000429035 AP4E1Q9UPM8 1137 aa14.65□□□□□ -0.06
SDC1-204ENST00000429035 OR1A2Q9Y585 309 aa14.65□□□□□ -0.06
SDC1-204ENST00000429035 AGRPO00253 132 aa14.64□□□□□ -0.07
SDC1-204ENST00000429035 EEF2KO00418 725 aaKnown RBP14.64□□□□□ -0.07
SDC1-204ENST00000429035 YY2O15391 372 aa14.64□□□□□ -0.07
SDC1-204ENST00000429035 DAPK3O43293 454 aa14.64□□□□□ -0.07
SDC1-204ENST00000429035 DXOO77932 396 aaKnown RBP14.64□□□□□ -0.07
SDC1-204ENST00000429035 PSMA2P25787 234 aa14.64□□□□□ -0.07
SDC1-204ENST00000429035 BLKP51451 505 aa14.64□□□□□ -0.07
SDC1-204ENST00000429035 UCNP55089 124 aa14.64□□□□□ -0.07
SDC1-204ENST00000429035 ELOCQ15369 112 aa14.64□□□□□ -0.07
SDC1-204ENST00000429035 STX1AQ16623 288 aa14.64□□□□□ -0.07
SDC1-204ENST00000429035 ALG11Q2TAA5 492 aa14.64□□□□□ -0.07
SDC1-204ENST00000429035 TMEM52BQ4KMG9 183 aa14.64□□□□□ -0.07
SDC1-204ENST00000429035 FSTL5Q8N475 847 aaPredicted RBP14.64□□□□□ -0.07
SDC1-204ENST00000429035 ARL10Q8N8L6 244 aa14.64□□□□□ -0.07
SDC1-204ENST00000429035 CCDC74AQ96AQ1 378 aa14.64□□□□□ -0.07
SDC1-204ENST00000429035 VOPP1Q96AW1 172 aa14.64□□□□□ -0.07
SDC1-204ENST00000429035 CINPQ9BW66 212 aaPredicted RBP14.64□□□□□ -0.07
SDC1-204ENST00000429035 SUV39H2Q9H5I1 410 aa14.64□□□□□ -0.07
SDC1-204ENST00000429035 DHX35Q9H5Z1 703 aaKnown RBP14.64□□□□□ -0.07
SDC1-204ENST00000429035 SP110Q9HB58 689 aa14.64□□□□□ -0.07
SDC1-204ENST00000429035 EPB41L5Q9HCM4 733 aa14.64□□□□□ -0.07
SDC1-204ENST00000429035 ANO10Q9NW15 660 aa14.64□□□□□ -0.07
SDC1-204ENST00000429035 LIMA1Q9UHB6 759 aaKnown RBP14.64□□□□□ -0.07
SDC1-204ENST00000429035 PADI4Q9UM07 663 aa14.64□□□□□ -0.07
SDC1-204ENST00000429035 A0A1W2PNU3 283 aaPredicted RBP14.63□□□□□ -0.07
SDC1-204ENST00000429035 ARHGAP42A6NI28 874 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 WASH4PA8MWX3 477 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 J3KR12 359 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 TK2O00142 265 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 DFFAO00273 331 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 TOR1BO14657 336 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 RIOK3O14730 519 aaKnown RBP14.63□□□□□ -0.07
SDC1-204ENST00000429035 TCEA3O75764 348 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 RASGRP1O95267 797 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 ALPIP09923 528 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 FERP16591 822 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 LIG3P49916 1009 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 HK3P52790 923 aa14.63□□□□□ -0.07
SDC1-204ENST00000429035 AIF1P55008 147 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms