RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 POLD3Q15054 466 aaPredicted RBP16.93■□□□□ 0.3
CHCHD3-202ENST00000423635 GJB7Q6PEY0 223 aa16.93■□□□□ 0.3
CHCHD3-202ENST00000423635 TRIM65Q6PJ69 517 aa16.93■□□□□ 0.3
CHCHD3-202ENST00000423635 ENPP7Q6UWV6 458 aa16.93■□□□□ 0.3
CHCHD3-202ENST00000423635 GDPD4Q6W3E5 623 aa16.93■□□□□ 0.3
CHCHD3-202ENST00000423635 SHC3Q92529 594 aa16.93■□□□□ 0.3
CHCHD3-202ENST00000423635 RBM15Q96T37 977 aaKnown RBP eCLIP16.93■□□□□ 0.3
CHCHD3-202ENST00000423635 TUBD1Q9UJT1 453 aa16.93■□□□□ 0.3
CHCHD3-202ENST00000423635 RNF215Q9Y6U7 377 aa16.93■□□□□ 0.3
CHCHD3-202ENST00000423635 PPP1R3GB7ZBB8 358 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 TIMP2P16035 220 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 ITIH2P19823 946 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 GABRB2P47870 512 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 MAPK10P53779 464 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 FOXK1P85037 733 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 PTK2Q05397 1052 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 NFATC4Q14934 902 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 LRRC14Q15048 493 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 IRF4Q15306 451 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 ARHGAP44Q17R89 818 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 WSCD2Q2TBF2 565 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 TMEM52BQ4KMG9 183 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 CERCAMQ5T4B2 595 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 TMEM164Q5U3C3 297 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 BORAQ6PGQ7 559 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 RD3Q7Z3Z2 195 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 TMPRSS9Q7Z410 1059 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 PTRH1Q86Y79 214 aaKnown RBP16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 DRC7Q8IY82 874 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 Q8N9G6 341 aaPredicted RBP16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 APOOQ9BUR5 198 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 EPN3Q9H201 632 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 SYNCQ9H7C4 482 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 DKK3Q9UBP4 350 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 ATP6V1DQ9Y5K8 247 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 DGKBQ9Y6T7 804 aa16.92■□□□□ 0.3
CHCHD3-202ENST00000423635 BICDL2A1A5D9 508 aa16.91■□□□□ 0.3
CHCHD3-202ENST00000423635 TNFP01375 233 aa16.91■□□□□ 0.3
CHCHD3-202ENST00000423635 SLC9A1P19634 815 aa16.91■□□□□ 0.3
CHCHD3-202ENST00000423635 KRT9P35527 623 aa16.91■□□□□ 0.3
CHCHD3-202ENST00000423635 SUOXP51687 545 aa16.91■□□□□ 0.3
CHCHD3-202ENST00000423635 AGERQ15109 404 aa16.91■□□□□ 0.3
CHCHD3-202ENST00000423635 ISM2Q6H9L7 571 aa16.91■□□□□ 0.3
CHCHD3-202ENST00000423635 SPRED1Q7Z699 444 aa16.91■□□□□ 0.3
CHCHD3-202ENST00000423635 ATL2Q8NHH9 583 aa16.91■□□□□ 0.3
CHCHD3-202ENST00000423635 NELFBQ8WX92 580 aa16.91■□□□□ 0.3
CHCHD3-202ENST00000423635 TIGD1Q96MW7 591 aa16.91■□□□□ 0.3
CHCHD3-202ENST00000423635 GDPD2Q9HCC8 539 aa16.91■□□□□ 0.3
CHCHD3-202ENST00000423635 NDFIP2Q9NV92 336 aa16.91■□□□□ 0.3
CHCHD3-202ENST00000423635 MFHAS1Q9Y4C4 1052 aa16.91■□□□□ 0.3
CHCHD3-202ENST00000423635 CHD5Q8TDI0 1954 aa16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 STMND1H3BQB6 276 aa16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 NUDT21O43809 227 aaKnown RBP16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 CASRP41180 1078 aa16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 MAPKAPK2P49137 400 aa16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 NRG1Q02297 640 aaPredicted RBP16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 HLTFQ14527 1009 aaKnown RBP eCLIP16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 INPP5AQ14642 412 aa16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 TCEA2Q15560 299 aa16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 SKIDA1Q1XH10 827 aa16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 LRRC73Q5JTD7 316 aa16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 KLHL10Q6JEL2 608 aa16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 NYAP1Q6ZVC0 841 aa16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 NLRP14Q86W24 1093 aa16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 ELOA2Q8IYF1 753 aaPredicted RBP16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 NKD1Q969G9 470 aa16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 CRACR2AQ9BSW2 395 aa16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 WRAP53Q9BUR4 548 aaKnown RBP16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 MAGEH1Q9H213 219 aa16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 SEMA6CQ9H3T2 930 aa16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 LRIT1Q9P2V4 623 aa16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 APEX2Q9UBZ4 518 aa16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 KLQ9UEF7 1012 aa16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 HOOK1Q9UJC3 728 aaKnown RBP16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 ANAPC2Q9UJX6 822 aa16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 MAN1B1Q9UKM7 699 aa16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 MAN2B2Q9Y2E5 1009 aa16.9■□□□□ 0.3
CHCHD3-202ENST00000423635 BMP6P22004 513 aa16.89■□□□□ 0.29
CHCHD3-202ENST00000423635 CDH5P33151 784 aaPredicted RBP16.89■□□□□ 0.29
CHCHD3-202ENST00000423635 CLCN1P35523 988 aa16.89■□□□□ 0.29
CHCHD3-202ENST00000423635 FLT3P36888 993 aa16.89■□□□□ 0.29
CHCHD3-202ENST00000423635 POLE2P56282 527 aa16.89■□□□□ 0.29
CHCHD3-202ENST00000423635 B4GALNT1Q00973 533 aa16.89■□□□□ 0.29
CHCHD3-202ENST00000423635 RAD51Q06609 339 aa16.89■□□□□ 0.29
CHCHD3-202ENST00000423635 KCNAB2Q13303 367 aa16.89■□□□□ 0.29
CHCHD3-202ENST00000423635 C16orf72Q14CZ0 275 aa16.89■□□□□ 0.29
CHCHD3-202ENST00000423635 IGFBP7Q16270 282 aa16.89■□□□□ 0.29
CHCHD3-202ENST00000423635 C14orf28Q4W4Y0 310 aa16.89■□□□□ 0.29
CHCHD3-202ENST00000423635 ATXN7L2Q5T6C5 722 aaPredicted RBP16.89■□□□□ 0.29
CHCHD3-202ENST00000423635 MANEALQ5VSG8 457 aa16.89■□□□□ 0.29
CHCHD3-202ENST00000423635 IRF2BP1Q8IU81 584 aa16.89■□□□□ 0.29
CHCHD3-202ENST00000423635 HCAR2Q8TDS4 363 aa16.89■□□□□ 0.29
CHCHD3-202ENST00000423635 C18orf8Q96DM3 657 aa16.89■□□□□ 0.29
CHCHD3-202ENST00000423635 PSMG3-AS1Q96PY0 264 aa16.89■□□□□ 0.29
CHCHD3-202ENST00000423635 TTYH3Q9C0H2 523 aa16.89■□□□□ 0.29
CHCHD3-202ENST00000423635 CDH19Q9H159 772 aa16.89■□□□□ 0.29
CHCHD3-202ENST00000423635 TMEM248Q9NWD8 314 aa16.89■□□□□ 0.29
CHCHD3-202ENST00000423635 AKAP7Q9P0M2 348 aaPredicted RBP16.89■□□□□ 0.29
CHCHD3-202ENST00000423635 HPCAL4Q9UM19 191 aa16.89■□□□□ 0.29
CHCHD3-202ENST00000423635 PCDHGA3Q9Y5H0 932 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms