RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 DPCR1Q3MIW9 517 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 ESRP1Q6NXG1 681 aaKnown RBP8.19□□□□□ -1.1
VIM-202ENST00000421459 IGF2-ASQ6U949 168 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 MACC1Q6ZN28 852 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 PRICKLE2Q7Z3G6 844 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 TMPRSS9Q7Z410 1059 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 CLEC14AQ86T13 490 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 VASH2Q86V25 355 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 ZSWIM9Q86XI8 627 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 JAMLQ86YT9 394 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 PLPP6Q8IY26 295 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 FBXO39Q8N4B4 442 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 DENND6BQ8NEG7 585 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 TPCN2Q8NHX9 752 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 FAM172AQ8WUF8 416 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 EXTL1Q92935 676 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 RAB7BQ96AH8 199 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 TBC1D31Q96DN5 1066 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 HMCESQ96FZ2 354 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 MED8Q96G25 268 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 CCNL2Q96S94 520 aaPredicted RBP8.19□□□□□ -1.1
VIM-202ENST00000421459 APOOQ9BUR5 198 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 CPEB1Q9BZB8 566 aaKnown RBP8.19□□□□□ -1.1
VIM-202ENST00000421459 TTYH3Q9C0H2 523 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 MAGEH1Q9H213 219 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 MRPL40Q9NQ50 206 aaKnown RBP8.19□□□□□ -1.1
VIM-202ENST00000421459 TAB2Q9NYJ8 693 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.19□□□□□ -1.1
VIM-202ENST00000421459 NCKIPSDQ9NZQ3 722 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 LHX3Q9UBR4 397 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 NOCTQ9UK39 431 aaKnown RBP8.19□□□□□ -1.1
VIM-202ENST00000421459 HPCAL4Q9UM19 191 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 GPR34Q9UPC5 381 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 DOLKQ9UPQ8 538 aa8.19□□□□□ -1.1
VIM-202ENST00000421459 TDRD6O60522 2096 aaKnown RBP8.18□□□□□ -1.1
VIM-202ENST00000421459 A8MX80 341 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 J3KR12 359 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 CREB3O43889 395 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 TCEA3O75764 348 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 LSM8O95777 96 aaKnown RBP8.18□□□□□ -1.1
VIM-202ENST00000421459 CYP1A1P04798 512 aaPredicted RBP8.18□□□□□ -1.1
VIM-202ENST00000421459 ITGA2BP08514 1039 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 CTSEP14091 401 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 MMP8P22894 467 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 SDC4P31431 198 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 ETV5P41161 510 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 RGRP47804 291 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 LIG3P49916 1009 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 HK3P52790 923 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 SRP54P61011 504 aaKnown RBP8.18□□□□□ -1.1
VIM-202ENST00000421459 RHOAP61586 193 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 NRG1Q02297 640 aaPredicted RBP8.18□□□□□ -1.1
VIM-202ENST00000421459 KCNC4Q03721 635 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 BECN1Q14457 450 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 LRRC14Q15048 493 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 TMEM52BQ4KMG9 183 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 SCYL2Q6P3W7 929 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 WDR59Q6PJI9 974 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 RAB11FIP2Q7L804 512 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 ZFAND4Q86XD8 727 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 CAMK1DQ8IU85 385 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 PELI3Q8N2H9 469 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 ARL10Q8N8L6 244 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 MLKLQ8NB16 471 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 CCL4L1Q8NHW4 92 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 OR1E3Q8WZA6 343 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 CENPIQ92674 756 aaPredicted RBP8.18□□□□□ -1.1
VIM-202ENST00000421459 GLMNQ92990 594 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 NAT6Q93015 286 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 PDXPQ96GD0 296 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 GDAP1L1Q96MZ0 367 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 GFM1Q96RP9 751 aaKnown RBP8.18□□□□□ -1.1
VIM-202ENST00000421459 OSBPL1AQ9BXW6 950 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 STK33Q9BYT3 514 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 EDEM3Q9BZQ6 932 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 GANQ9H2C0 597 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 CLMPQ9H6B4 373 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 PCDH12Q9NPG4 1184 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 NLRC4Q9NPP4 1024 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 GPATCH2LQ9NWQ4 482 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 PISDQ9UG56 409 aa8.18□□□□□ -1.1
VIM-202ENST00000421459 PRAMEF33A0A0G2JMD5 474 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 TTC24A2A3L6 582 aaPredicted RBP8.17□□□□□ -1.1
VIM-202ENST00000421459 TMEM202A6NGA9 273 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 CAPN8A6NHC0 703 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 RASA4BC9J798 803 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 D6RAR5 112 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 RASA4O43374 803 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 PRAMEF10O60809 474 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 WISP1O95388 367 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 IGSF6O95976 241 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 FAM87AP0C7U9 286 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 EPHB2P29323 1055 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 ETFBP38117 255 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 INHBCP55103 352 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 POLR2FP61218 127 aaKnown RBP8.17□□□□□ -1.1
VIM-202ENST00000421459 CDR2Q01850 454 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 SERINC3Q13530 473 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 ELOCQ15369 112 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 ACBD5Q5T8D3 534 aaPredicted RBP8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms