RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 XPAP23025 273 aaPredicted RBP12.59□□□□□ -0.39
SKA1-203ENST00000417656 PTPN3P26045 913 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 DPP6P42658 865 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 ATP5OP48047 213 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 CCR5P51681 352 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 NIPAL4Q0D2K0 466 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 KLF1Q13351 362 aaPredicted RBP12.59□□□□□ -0.39
SKA1-203ENST00000417656 SF3A2Q15428 464 aaKnown RBP12.59□□□□□ -0.39
SKA1-203ENST00000417656 SLC45A4Q5BKX6 768 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 RALGPS1Q5JS13 557 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 SEL1L3Q68CR1 1132 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 TRIM69Q86WT6 500 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 CDKL3Q8IVW4 592 aaPredicted RBP12.59□□□□□ -0.39
SKA1-203ENST00000417656 ARRDC2Q8TBH0 407 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 PDCD6IPQ8WUM4 868 aaKnown RBP12.59□□□□□ -0.39
SKA1-203ENST00000417656 DNASE2BQ8WZ79 361 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 RAB7BQ96AH8 199 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 ECHDC3Q96DC8 303 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 SLC6A18Q96N87 628 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 AGAP3Q96P47 875 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 TLR10Q9BXR5 811 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 C10orf88Q9H8K7 445 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 EBF2Q9HAK2 575 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 FSCN3Q9NQT6 498 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 VPS45Q9NRW7 570 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 HAUS2Q9NVX0 235 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 AMACRQ9UHK6 382 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 ATP8A1Q9Y2Q0 1164 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 PCDHGC4Q9Y5F7 938 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.59□□□□□ -0.39
SKA1-203ENST00000417656 FRYLO94915 3013 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 A0A1W2PPC4 97 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 GOLGA6L9A6NEM1 432 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 HACD1B0YJ81 288 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 NEMP1O14524 444 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 AREL1O15033 823 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 HTRA2O43464 458 aaPredicted RBP12.58□□□□□ -0.4
SKA1-203ENST00000417656 SOCS5O75159 536 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 PRLRP16471 622 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 CD27P26842 260 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 HOXD12P35452 270 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 EIF3EP60228 445 aaKnown RBP12.58□□□□□ -0.4
SKA1-203ENST00000417656 SEMG2Q02383 582 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 WASHC5Q12768 1159 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 XRCC4Q13426 336 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 IHHQ14623 411 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 CSRP2Q16527 193 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 UGP2Q16851 508 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 LRRK1Q38SD2 2015 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 TRIM61Q5EBN2 209 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 ZNF569Q5MCW4 686 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 BRAT1Q6PJG6 821 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 LAYNQ6UX15 382 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 PRR23CQ6ZRP0 262 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 TTC7BQ86TV6 843 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 HORMAD1Q86X24 394 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 KIAA2013Q8IYS2 634 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 SLC35F6Q8N357 371 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 KLK6Q92876 244 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 MYOCQ99972 504 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 CARD9Q9H257 536 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 PCDH12Q9NPG4 1184 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 SUSD2Q9UGT4 822 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 ZFR2Q9UPR6 939 aaKnown RBP12.58□□□□□ -0.4
SKA1-203ENST00000417656 R3HDM2Q9Y2K5 976 aaKnown RBP12.58□□□□□ -0.4
SKA1-203ENST00000417656 RAI2Q9Y5P3 530 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.58□□□□□ -0.4
SKA1-203ENST00000417656 DOCK9Q9BZ29 2069 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 ADAMTS9Q9P2N4 1935 aa12.58□□□□□ -0.4
SKA1-203ENST00000417656 FAM186AA6NE01 2351 aa12.57□□□□□ -0.4
SKA1-203ENST00000417656 GVINP1Q7Z2Y8 2422 aa12.57□□□□□ -0.4
SKA1-203ENST00000417656 A0A1B0GTW7 788 aa12.57□□□□□ -0.4
SKA1-203ENST00000417656 F5H423 210 aaPredicted RBP12.57□□□□□ -0.4
SKA1-203ENST00000417656 ENC1O14682 589 aa12.57□□□□□ -0.4
SKA1-203ENST00000417656 BCAT2O15382 392 aaPredicted RBP12.57□□□□□ -0.4
SKA1-203ENST00000417656 PGLSO95336 258 aa12.57□□□□□ -0.4
SKA1-203ENST00000417656 MMP2P08253 660 aa12.57□□□□□ -0.4
SKA1-203ENST00000417656 ZNF806P0C7X5 589 aa12.57□□□□□ -0.4
SKA1-203ENST00000417656 RBP3P10745 1247 aa12.57□□□□□ -0.4
SKA1-203ENST00000417656 GNSP15586 552 aa12.57□□□□□ -0.4
SKA1-203ENST00000417656 RBL1P28749 1068 aa12.57□□□□□ -0.4
SKA1-203ENST00000417656 MMP12P39900 470 aa12.57□□□□□ -0.4
SKA1-203ENST00000417656 CD86P42081 329 aa12.57□□□□□ -0.4
SKA1-203ENST00000417656 DUOXA1Q1HG43 343 aa12.57□□□□□ -0.4
SKA1-203ENST00000417656 ZNF284Q2VY69 593 aa12.57□□□□□ -0.4
SKA1-203ENST00000417656 TMEM259Q4ZIN3 620 aa12.57□□□□□ -0.4
SKA1-203ENST00000417656 SETMARQ53H47 684 aaPredicted RBP12.57□□□□□ -0.4
SKA1-203ENST00000417656 KIAA1161Q6NSJ0 714 aa12.57□□□□□ -0.4
SKA1-203ENST00000417656 NEK5Q6P3R8 708 aa12.57□□□□□ -0.4
SKA1-203ENST00000417656 ADAT2Q7Z6V5 191 aaKnown RBP12.57□□□□□ -0.4
SKA1-203ENST00000417656 SLC13A5Q86YT5 568 aaPredicted RBP12.57□□□□□ -0.4
SKA1-203ENST00000417656 C12orf50Q8NA57 414 aaPredicted RBP12.57□□□□□ -0.4
SKA1-203ENST00000417656 C1orf216Q8TAB5 229 aa12.57□□□□□ -0.4
SKA1-203ENST00000417656 HCAR2Q8TDS4 363 aa12.57□□□□□ -0.4
SKA1-203ENST00000417656 UBE2Q2Q8WVN8 375 aa12.57□□□□□ -0.4
SKA1-203ENST00000417656 HTR3CQ8WXA8 447 aa12.57□□□□□ -0.4
SKA1-203ENST00000417656 ATG4AQ8WYN0 398 aa12.57□□□□□ -0.4
SKA1-203ENST00000417656 WRAP53Q9BUR4 548 aaKnown RBP12.57□□□□□ -0.4
SKA1-203ENST00000417656 TDRD1Q9BXT4 1180 aaKnown RBP12.57□□□□□ -0.4
SKA1-203ENST00000417656 TM9SF3Q9HD45 589 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms