RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 LHX3Q9UBR4 397 aa6.46□□□□□ -1.38
USP54-202ENST00000413442 SERGEFQ9UGK8 458 aa6.46□□□□□ -1.38
USP54-202ENST00000413442 ANGPTL2Q9UKU9 493 aa6.46□□□□□ -1.38
USP54-202ENST00000413442 PCOLCE2Q9UKZ9 415 aa6.46□□□□□ -1.38
USP54-202ENST00000413442 NEUROG3Q9Y4Z2 214 aa6.46□□□□□ -1.38
USP54-202ENST00000413442 PCDHA13Q9Y5I0 950 aa6.46□□□□□ -1.38
USP54-202ENST00000413442 SNX11Q9Y5W9 270 aa6.46□□□□□ -1.38
USP54-202ENST00000413442 ANKRD36A6QL64 1941 aa6.46□□□□□ -1.38
USP54-202ENST00000413442 PLXNA2O75051 1894 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 CFAP54Q96N23 3096 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 SPTY2D1-AS1A0A0U1RR47 76 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 CCDC66A2RUB6 948 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 J3KR12 359 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 DFFAO00273 331 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 TNFRSF10CO14798 259 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 PPP1R12AO14974 1030 aaPredicted RBP6.45□□□□□ -1.38
USP54-202ENST00000413442 INSIG1O15503 277 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 PJA2O43164 708 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 ZW10O43264 779 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 ATMINO43313 823 aaPredicted RBP6.45□□□□□ -1.38
USP54-202ENST00000413442 HTRA2O43464 458 aaPredicted RBP6.45□□□□□ -1.38
USP54-202ENST00000413442 CBFA2T3O75081 653 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 NEBLO76041 1014 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 NDUFA10O95299 355 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 PAK4O96013 591 aaPredicted RBP6.45□□□□□ -1.38
USP54-202ENST00000413442 UGT2B4P06133 528 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 THEGLP0DJG4 465 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 TIMP2P16035 220 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 ZNF30P17039 623 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 CR2P20023 1033 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 PMLP29590 882 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 MMP13P45452 471 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 NOP2P46087 812 aaKnown RBP6.45□□□□□ -1.38
USP54-202ENST00000413442 SCNN1BP51168 640 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 THOP1P52888 689 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 GSDMDP57764 484 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 ZNF211Q13398 564 aaPredicted RBP6.45□□□□□ -1.38
USP54-202ENST00000413442 XRCC4Q13426 336 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 DPYSL3Q14195 570 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 NUMA1Q14980 2115 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 CA9Q16790 459 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 TFDP3Q5H9I0 405 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 ZFYVE27Q5T4F4 411 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 PSAPL1Q6NUJ1 521 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 C11orf63Q6NUN7 778 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 PARS2Q7L3T8 475 aaKnown RBP6.45□□□□□ -1.38
USP54-202ENST00000413442 CBARPQ8N350 705 aaPredicted RBP6.45□□□□□ -1.38
USP54-202ENST00000413442 FAM181AQ8N9Y4 354 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 TSEN2Q8NCE0 465 aaKnown RBP6.45□□□□□ -1.38
USP54-202ENST00000413442 OR6C4Q8NGE1 309 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 EXD1Q8NHP7 514 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 TPCN2Q8NHX9 752 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 WDR48Q8TAF3 677 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 BAHD1Q8TBE0 780 aaPredicted RBP6.45□□□□□ -1.38
USP54-202ENST00000413442 KIAA1524Q8TCG1 905 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 GRIN3AQ8TCU5 1115 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 TRAF3IP1Q8TDR0 691 aaPredicted RBP6.45□□□□□ -1.38
USP54-202ENST00000413442 SAP25Q8TEE9 199 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 SETD7Q8WTS6 366 aaKnown RBP6.45□□□□□ -1.38
USP54-202ENST00000413442 SCG3Q8WXD2 468 aaKnown RBP6.45□□□□□ -1.38
USP54-202ENST00000413442 ADAMTS14Q8WXS8 1223 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 CENPTQ96BT3 561 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 RBM41Q96IZ5 413 aaKnown RBP6.45□□□□□ -1.38
USP54-202ENST00000413442 BMFQ96LC9 184 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 C19orf43Q9BQ61 176 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 MGME1Q9BQP7 344 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 CALN1Q9BXU9 219 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 MAGEB5Q9BZ81 275 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 TM6SF2Q9BZW4 377 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 TRIM7Q9C029 511 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 SMOC1Q9H4F8 434 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 EBF2Q9HAK2 575 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 CD93Q9NPY3 652 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 GPR27Q9NS67 375 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 RAD18Q9NS91 495 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.45□□□□□ -1.38
USP54-202ENST00000413442 SALL4Q9UJQ4 1053 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 SSUH2Q9Y2M2 353 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 ALG6Q9Y672 507 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 ASCC3Q8N3C0 2202 aaKnown RBP6.45□□□□□ -1.38
USP54-202ENST00000413442 TMEM131Q92545 1883 aa6.45□□□□□ -1.38
USP54-202ENST00000413442 TP53BP1Q12888 1972 aaPredicted RBP6.44□□□□□ -1.38
USP54-202ENST00000413442 SHROOM3Q8TF72 1996 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 MIF4GDA9UHW6 222 aaKnown RBP6.44□□□□□ -1.38
USP54-202ENST00000413442 HACD1B0YJ81 288 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 H0Y8X5 98 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 TRAFD1O14545 582 aaPredicted RBP6.44□□□□□ -1.38
USP54-202ENST00000413442 APOL1O14791 398 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 SLC31A1O15431 190 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 SPOPO43791 374 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 SH3BP5O60239 455 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 DKK1O94907 266 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 LDOC1O95751 146 aaPredicted RBP6.44□□□□□ -1.38
USP54-202ENST00000413442 PEX11BO96011 259 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 EPOP01588 193 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 CSF2P04141 144 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 GP1BAP07359 652 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 CCNB1P14635 433 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 CKMT2P17540 419 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 TGM2P21980 687 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms