RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 PGS1Q32NB8 556 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 SETD3Q86TU7 594 aaPredicted RBP12.03□□□□□ -0.48
HMGB1-206ENST00000405805 DHFR2Q86XF0 187 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 OFCC1Q8IZS5 231 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 WNT8BQ93098 351 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 BORCS5Q969J3 196 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 PKP2Q99959 881 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 EML4Q9HC35 981 aaKnown RBP12.03□□□□□ -0.48
HMGB1-206ENST00000405805 MPP6Q9NZW5 540 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 AFF4Q9UHB7 1163 aaKnown RBP12.03□□□□□ -0.48
HMGB1-206ENST00000405805 SORCS3Q9UPU3 1222 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 FAM50BQ9Y247 325 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 MYRFQ9Y2G1 1151 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 TTC24A2A3L6 582 aaPredicted RBP12.03□□□□□ -0.48
HMGB1-206ENST00000405805 TRPC5OSA6NMA1 111 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 SNTNA6NMZ2 147 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 POMCP01189 267 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 FYNP06241 537 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 CCR1P32246 355 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 MATKP42679 507 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 RAD23AP54725 363 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 MAPRE2Q15555 327 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 SDE2Q6IQ49 451 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 UBR7Q8N806 425 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 PCYOX1LQ8NBM8 494 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 MAGEE2Q8TD90 523 aaPredicted RBP12.03□□□□□ -0.48
HMGB1-206ENST00000405805 COQ10BQ9H8M1 238 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 GBA2Q9HCG7 927 aaPredicted RBP12.03□□□□□ -0.48
HMGB1-206ENST00000405805 UCKL1Q9NWZ5 548 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 COQ3Q9NZJ6 369 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 GIMAP2Q9UG22 337 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 ZDHHC2Q9UIJ5 367 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 RAP2CQ9Y3L5 183 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 STYXL1Q9Y6J8 313 aa12.03□□□□□ -0.48
HMGB1-206ENST00000405805 STBD1O95210 358 aa12.02□□□□□ -0.48
HMGB1-206ENST00000405805 IFI30P13284 250 aa12.02□□□□□ -0.48
HMGB1-206ENST00000405805 CD151P48509 253 aa12.02□□□□□ -0.48
HMGB1-206ENST00000405805 COPZ1P61923 177 aa12.02□□□□□ -0.48
HMGB1-206ENST00000405805 SDHAF4Q5VUM1 108 aa12.02□□□□□ -0.48
HMGB1-206ENST00000405805 IL23RQ5VWK5 629 aa12.02□□□□□ -0.48
HMGB1-206ENST00000405805 NEK5Q6P3R8 708 aa12.02□□□□□ -0.48
HMGB1-206ENST00000405805 KLHDC10Q6PID8 442 aa12.02□□□□□ -0.48
HMGB1-206ENST00000405805 XKR5Q6UX68 686 aa12.02□□□□□ -0.48
HMGB1-206ENST00000405805 SMYD1Q8NB12 490 aa12.02□□□□□ -0.48
HMGB1-206ENST00000405805 TAMM41Q96BW9 452 aa12.02□□□□□ -0.48
HMGB1-206ENST00000405805 ZBED3Q96IU2 234 aaPredicted RBP12.02□□□□□ -0.48
HMGB1-206ENST00000405805 MTG1Q9BT17 334 aaPredicted RBP12.02□□□□□ -0.48
HMGB1-206ENST00000405805 MID1IP1Q9NPA3 183 aa12.02□□□□□ -0.48
HMGB1-206ENST00000405805 ABI2Q9NYB9 513 aaPredicted RBP12.02□□□□□ -0.48
HMGB1-206ENST00000405805 PDZK1P1A8MUH7 402 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 PDHXO00330 501 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 RAD51BO15315 384 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 TADA2AO75478 443 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 CD4P01730 458 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 CYP3A5P20815 502 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 CES1P23141 567 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 PRKCHP24723 683 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 SEMA5AQ13591 1074 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 CYP51A1Q16850 503 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 NCBP2-AS2Q69YL0 99 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 NEPROQ6NW34 567 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 KLHL35Q6PF15 583 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 B3GALNT2Q8NCR0 500 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 SHCBP1Q8NEM2 672 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 ACMSDQ8TDX5 336 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 LPPQ93052 612 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 KLHL5Q96PQ7 755 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 GAD1Q99259 594 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 PDLIM7Q9NR12 457 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 MORF4L1Q9UBU8 362 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 FETUBQ9UGM5 382 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 COL24A1Q17RW2 1714 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 CLOCKO15516 846 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 SNX2O60749 519 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 GCATO75600 419 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 MPOP05164 745 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 ARSAP15289 507 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 INHBEP58166 350 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 INPP5AQ14642 412 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 TLR1Q15399 786 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 PFKFB4Q16877 469 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 AGAP9Q5VTM2 703 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 C11orf74Q86VG3 221 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 HORMAD1Q86X24 394 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 PDSS2Q86YH6 399 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 POC5Q8NA72 575 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 ESAMQ96AP7 390 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 FCRL3Q96P31 734 aaPredicted RBP12.02□□□□□ -0.49
HMGB1-206ENST00000405805 ARPC5LQ9BPX5 153 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 RAD21L1Q9H4I0 556 aa12.02□□□□□ -0.49
HMGB1-206ENST00000405805 PTGES3LE9PB15 166 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 PRKACBP22694 351 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 S100A5P33763 92 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 SEPHS1P49903 392 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 DEFA1P59665 94 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 DEFA3P59666 94 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 PON2Q15165 354 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 ZNF484Q5JVG2 852 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 LIPMQ5VYY2 423 aa12.01□□□□□ -0.49
HMGB1-206ENST00000405805 SLC2A7Q6PXP3 512 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms