RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ARL4CP56559 192 aa18.22■□□□□ 0.51
SDC1-203ENST00000403076 VSNL1P62760 191 aa18.22■□□□□ 0.51
SDC1-203ENST00000403076 CDH17Q12864 832 aa18.22■□□□□ 0.51
SDC1-203ENST00000403076 GALNT3Q14435 633 aa18.22■□□□□ 0.51
SDC1-203ENST00000403076 POM121L1PQ3SYA9 428 aa18.22■□□□□ 0.51
SDC1-203ENST00000403076 WDR93Q6P2C0 686 aa18.22■□□□□ 0.51
SDC1-203ENST00000403076 RANBP10Q6VN20 620 aa18.22■□□□□ 0.51
SDC1-203ENST00000403076 CCDC25Q86WR0 208 aa18.22■□□□□ 0.51
SDC1-203ENST00000403076 MMAAQ8IVH4 418 aaKnown RBP18.22■□□□□ 0.51
SDC1-203ENST00000403076 PDIK1LQ8N165 341 aa18.22■□□□□ 0.51
SDC1-203ENST00000403076 ZNF687Q8N1G0 1237 aa18.22■□□□□ 0.51
SDC1-203ENST00000403076 FLCNQ8NFG4 579 aa18.22■□□□□ 0.51
SDC1-203ENST00000403076 EDAQ92838 391 aa18.22■□□□□ 0.51
SDC1-203ENST00000403076 NEUROG2Q9H2A3 272 aa18.22■□□□□ 0.51
SDC1-203ENST00000403076 ZDHHC18Q9NUE0 388 aa18.22■□□□□ 0.51
SDC1-203ENST00000403076 PIH1D1Q9NWS0 290 aaKnown RBP18.22■□□□□ 0.51
SDC1-203ENST00000403076 COL6A3P12111 3177 aa18.22■□□□□ 0.51
SDC1-203ENST00000403076 C1QTNF3-AMACRE9PGA6 284 aa18.21■□□□□ 0.51
SDC1-203ENST00000403076 AP3B1O00203 1094 aa18.21■□□□□ 0.51
SDC1-203ENST00000403076 TRAFD1O14545 582 aaPredicted RBP18.21■□□□□ 0.51
SDC1-203ENST00000403076 TP73O15350 636 aa18.21■□□□□ 0.51
SDC1-203ENST00000403076 HTRA2O43464 458 aaPredicted RBP18.21■□□□□ 0.51
SDC1-203ENST00000403076 PGLSO95336 258 aa18.21■□□□□ 0.51
SDC1-203ENST00000403076 CPP00450 1065 aa18.21■□□□□ 0.51
SDC1-203ENST00000403076 PDHA1P08559 390 aa18.21■□□□□ 0.51
SDC1-203ENST00000403076 TNFRSF8P28908 595 aa18.21■□□□□ 0.51
SDC1-203ENST00000403076 CHRNA4P43681 627 aa18.21■□□□□ 0.51
SDC1-203ENST00000403076 PSMD8P48556 350 aa18.21■□□□□ 0.51
SDC1-203ENST00000403076 SESN2P58004 480 aaPredicted RBP18.21■□□□□ 0.51
SDC1-203ENST00000403076 MTM1Q13496 603 aa18.21■□□□□ 0.51
SDC1-203ENST00000403076 SLC1A5Q15758 541 aa18.21■□□□□ 0.51
SDC1-203ENST00000403076 SIRPB2Q5JXA9 342 aa18.21■□□□□ 0.51
SDC1-203ENST00000403076 FAM46CQ5VWP2 391 aa18.21■□□□□ 0.51
SDC1-203ENST00000403076 KIAA1211LQ6NV74 962 aa18.21■□□□□ 0.51
SDC1-203ENST00000403076 LRRC8BQ6P9F7 803 aa18.21■□□□□ 0.51
SDC1-203ENST00000403076 CCNI2Q6ZMN8 369 aaPredicted RBP18.21■□□□□ 0.51
SDC1-203ENST00000403076 OR2T3Q8NH03 318 aa18.21■□□□□ 0.51
SDC1-203ENST00000403076 PWWP2AQ96N64 755 aa18.21■□□□□ 0.51
SDC1-203ENST00000403076 SERPINB12Q96P63 405 aa18.21■□□□□ 0.51
SDC1-203ENST00000403076 TRIB3Q96RU7 358 aa18.21■□□□□ 0.51
SDC1-203ENST00000403076 FMO2Q99518 471 aa18.21■□□□□ 0.51
SDC1-203ENST00000403076 CASS4Q9NQ75 786 aa18.21■□□□□ 0.51
SDC1-203ENST00000403076 DYRK4Q9NR20 520 aa18.21■□□□□ 0.51
SDC1-203ENST00000403076 SARDHQ9UL12 918 aa18.21■□□□□ 0.51
SDC1-203ENST00000403076 PPM1HQ9ULR3 514 aa18.21■□□□□ 0.51
SDC1-203ENST00000403076 A0A1W2PQ67 120 aa18.2■□□□□ 0.5
SDC1-203ENST00000403076 AVILO75366 819 aa18.2■□□□□ 0.5
SDC1-203ENST00000403076 FGF1P05230 155 aa18.2■□□□□ 0.5
SDC1-203ENST00000403076 TPH1P17752 444 aa18.2■□□□□ 0.5
SDC1-203ENST00000403076 COL9A1P20849 921 aa18.2■□□□□ 0.5
SDC1-203ENST00000403076 XPAP23025 273 aaPredicted RBP18.2■□□□□ 0.5
SDC1-203ENST00000403076 POLR2LP62875 67 aaKnown RBP18.2■□□□□ 0.5
SDC1-203ENST00000403076 HIF1AQ16665 826 aa18.2■□□□□ 0.5
SDC1-203ENST00000403076 BBS9Q3SYG4 887 aa18.2■□□□□ 0.5
SDC1-203ENST00000403076 ZNF805Q5CZA5 627 aa18.2■□□□□ 0.5
SDC1-203ENST00000403076 ZNF776Q68DI1 518 aaPredicted RBP18.2■□□□□ 0.5
SDC1-203ENST00000403076 PKN3Q6P5Z2 889 aa18.2■□□□□ 0.5
SDC1-203ENST00000403076 TRIM67Q6ZTA4 783 aa18.2■□□□□ 0.5
SDC1-203ENST00000403076 CAND1Q86VP6 1230 aaKnown RBP18.2■□□□□ 0.5
SDC1-203ENST00000403076 CACUL1Q86Y37 369 aa18.2■□□□□ 0.5
SDC1-203ENST00000403076 GSPT2Q8IYD1 628 aaKnown RBP18.2■□□□□ 0.5
SDC1-203ENST00000403076 NDUFAF2Q8N183 169 aa18.2■□□□□ 0.5
SDC1-203ENST00000403076 ZCCHC9Q8N567 271 aaKnown RBP18.2■□□□□ 0.5
SDC1-203ENST00000403076 EIF1ADQ8N9N8 165 aaKnown RBP18.2■□□□□ 0.5
SDC1-203ENST00000403076 PJA1Q8NG27 643 aa18.2■□□□□ 0.5
SDC1-203ENST00000403076 PPP1R16AQ96I34 528 aa18.2■□□□□ 0.5
SDC1-203ENST00000403076 OSBPL6Q9BZF3 934 aa18.2■□□□□ 0.5
SDC1-203ENST00000403076 FOXP3Q9BZS1 431 aa18.2■□□□□ 0.5
SDC1-203ENST00000403076 FBRSQ9HAH7 460 aa18.2■□□□□ 0.5
SDC1-203ENST00000403076 BFARQ9NZS9 450 aa18.2■□□□□ 0.5
SDC1-203ENST00000403076 SIT1Q9Y3P8 196 aa18.2■□□□□ 0.5
SDC1-203ENST00000403076 A0A1W2PQF6 199 aa18.19■□□□□ 0.5
SDC1-203ENST00000403076 PRLP01236 227 aa18.19■□□□□ 0.5
SDC1-203ENST00000403076 ATXN1LP0C7T5 689 aaKnown RBP18.19■□□□□ 0.5
SDC1-203ENST00000403076 MLNP12872 115 aa18.19■□□□□ 0.5
SDC1-203ENST00000403076 RPL26P61254 145 aaKnown RBP18.19■□□□□ 0.5
SDC1-203ENST00000403076 FZD5Q13467 585 aa18.19■□□□□ 0.5
SDC1-203ENST00000403076 DNAJC21Q5F1R6 531 aaKnown RBP18.19■□□□□ 0.5
SDC1-203ENST00000403076 FNBP1LQ5T0N5 605 aa18.19■□□□□ 0.5
SDC1-203ENST00000403076 DENND2CQ68D51 928 aa18.19■□□□□ 0.5
SDC1-203ENST00000403076 BRAT1Q6PJG6 821 aa18.19■□□□□ 0.5
SDC1-203ENST00000403076 CENPUQ71F23 418 aa18.19■□□□□ 0.5
SDC1-203ENST00000403076 TSPYL1Q9H0U9 437 aa18.19■□□□□ 0.5
SDC1-203ENST00000403076 RSPH9Q9H1X1 276 aaPredicted RBP18.19■□□□□ 0.5
SDC1-203ENST00000403076 POLMQ9NP87 494 aaPredicted RBP18.19■□□□□ 0.5
SDC1-203ENST00000403076 PHTF1Q9UMS5 762 aa18.19■□□□□ 0.5
SDC1-203ENST00000403076 RPL26L1Q9UNX3 145 aaKnown RBP18.19■□□□□ 0.5
SDC1-203ENST00000403076 UQCRHLA0A096LP55 91 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 C16orf96A6NNT2 1141 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 CHURC1-FNTBB4DL54 471 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 ANKRD66B4E2M5 251 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 FZD6O60353 706 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 PPFIA2O75334 1257 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 UQCRHP07919 91 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 MYBL2P10244 700 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 CTPS1P17812 591 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 ECHS1P30084 290 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 SLC8A1P32418 973 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 NPY2RP49146 381 aa18.18■□□□□ 0.5
SDC1-203ENST00000403076 SATB1Q01826 763 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms