RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 INSIG1O15503 277 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 SPINT1O43278 529 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 PIAS2O75928 621 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 TM7SF2O76062 418 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 PIGNO95427 931 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 GYPCP04921 128 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 FAM228BP0C875 321 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 TIMP2P16035 220 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 CKMT2P17540 419 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 IL1R2P27930 398 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 ACADVLP49748 655 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 CLDN6P56747 220 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 HNRNPKP61978 463 aaKnown RBP eCLIP13.55□□□□□ -0.24
VCX3A-202ENST00000398729 ELP6Q0PNE2 266 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 C19orf57Q0VDD7 668 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 ZNF211Q13398 564 aaPredicted RBP13.55□□□□□ -0.24
VCX3A-202ENST00000398729 ILKQ13418 452 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 DPYSQ14117 519 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 DPYSL2Q16555 572 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 SMTNL2Q2TAL5 461 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 PARGQ86W56 976 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 TMPRSS12Q86WS5 348 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 ARHGAP12Q8IWW6 846 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 SLC25A45Q8N413 288 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 NPWQ8N729 165 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 NIPA2Q8N8Q9 360 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 SLC39A7Q92504 469 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 TSC1Q92574 1164 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 HSPH1Q92598 858 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 ZNF641Q96N77 438 aaPredicted RBP13.55□□□□□ -0.24
VCX3A-202ENST00000398729 TUBGCP5Q96RT8 1024 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 UBL7Q96S82 380 aaPredicted RBP13.55□□□□□ -0.24
VCX3A-202ENST00000398729 NUP85Q9BW27 656 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 SUV39H2Q9H5I1 410 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 PRORYQ9H606 182 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 IP6K2Q9UHH9 426 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 IPO11Q9UI26 975 aaKnown RBP13.55□□□□□ -0.24
VCX3A-202ENST00000398729 ANAPC7Q9UJX3 599 aa13.55□□□□□ -0.24
VCX3A-202ENST00000398729 TDRD6O60522 2096 aaKnown RBP13.54□□□□□ -0.24
VCX3A-202ENST00000398729 MYO18BQ8IUG5 2567 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 SPTY2D1-AS1A0A0U1RR47 76 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 NEMP2A6NFY4 417 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 H3BM21 787 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 TK2O00142 265 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 TRIM38O00635 465 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 SIGLEC6O43699 453 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 TLX3O43711 291 aaPredicted RBP13.54□□□□□ -0.24
VCX3A-202ENST00000398729 MMP20O60882 483 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 ALPPL2P10696 532 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 HNF1BP35680 557 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 CSNK1DP48730 415 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 PFN3P60673 137 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 IL10RBQ08334 325 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 PDE1CQ14123 709 aaPredicted RBP13.54□□□□□ -0.24
VCX3A-202ENST00000398729 PTK2BQ14289 1009 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 FZD2Q14332 565 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 RFTN1Q14699 578 aaPredicted RBP13.54□□□□□ -0.24
VCX3A-202ENST00000398729 PROX2Q3B8N5 592 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 ZNF542PQ5EBM4 170 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 CCDC122Q5T0U0 273 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 ALKBH5Q6P6C2 394 aaKnown RBP13.54□□□□□ -0.24
VCX3A-202ENST00000398729 BRAT1Q6PJG6 821 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 TMCO3Q6UWJ1 677 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 SRLQ86TD4 932 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 TSEN2Q8NCE0 465 aaKnown RBP13.54□□□□□ -0.24
VCX3A-202ENST00000398729 OR4C6Q8NH72 309 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 CENPTQ96BT3 561 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 DCBLD2Q96PD2 775 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 WRAP53Q9BUR4 548 aaKnown RBP13.54□□□□□ -0.24
VCX3A-202ENST00000398729 CINPQ9BW66 212 aaPredicted RBP13.54□□□□□ -0.24
VCX3A-202ENST00000398729 XPO4Q9C0E2 1151 aaKnown RBP13.54□□□□□ -0.24
VCX3A-202ENST00000398729 ATP13A3Q9H7F0 1226 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.54□□□□□ -0.24
VCX3A-202ENST00000398729 UCKL1Q9NWZ5 548 aa13.54□□□□□ -0.24
VCX3A-202ENST00000398729 HECTD1Q9ULT8 2610 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 TSPAN11A1L157 253 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 MYO1FO00160 1098 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 FFAR2O15552 330 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 CBFA2T2O43439 604 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 CSF2P04141 144 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 CYP1A2P05177 515 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 RARAP10276 462 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 JUPP14923 745 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 NME1P15531 152 aaKnown RBP13.53□□□□□ -0.24
VCX3A-202ENST00000398729 TCF4P15884 667 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 ITIH2P19823 946 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 ACP1P24666 158 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 SERPINA4P29622 427 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 CASP14P31944 242 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 EIF2S3P41091 472 aaKnown RBP13.53□□□□□ -0.24
VCX3A-202ENST00000398729 ABCG1P45844 678 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 RENBPP51606 427 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 THOP1P52888 689 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 DAB2P98082 770 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 NSUN2Q08J23 767 aaKnown RBP eCLIP13.53□□□□□ -0.24
VCX3A-202ENST00000398729 UGP2Q16851 508 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 TMEM52BQ4KMG9 183 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 ERAP2Q6P179 960 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 ARHGAP36Q6ZRI8 547 aa13.53□□□□□ -0.24
VCX3A-202ENST00000398729 POLNQ7Z5Q5 900 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms