RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 ATP5HO75947 161 aa8.34□□□□□ -1.08
PTPRD-204ENST00000397606 MT-CYBP00156 380 aaPredicted RBP8.34□□□□□ -1.08
PTPRD-204ENST00000397606 PSMD8P48556 350 aa8.34□□□□□ -1.08
PTPRD-204ENST00000397606 ITPRIPL2Q3MIP1 535 aa8.34□□□□□ -1.08
PTPRD-204ENST00000397606 ANKRD20A4Q4UJ75 823 aa8.34□□□□□ -1.08
PTPRD-204ENST00000397606 DOK6Q6PKX4 331 aa8.34□□□□□ -1.08
PTPRD-204ENST00000397606 CHRDL2Q6WN34 429 aa8.34□□□□□ -1.08
PTPRD-204ENST00000397606 RBFAQ8N0V3 343 aa8.34□□□□□ -1.08
PTPRD-204ENST00000397606 ZMIZ2Q8NF64 920 aa8.34□□□□□ -1.08
PTPRD-204ENST00000397606 APOPT1Q96IL0 206 aa8.34□□□□□ -1.08
PTPRD-204ENST00000397606 FAR2Q96K12 515 aa8.34□□□□□ -1.08
PTPRD-204ENST00000397606 LRGUKQ96M69 825 aa8.34□□□□□ -1.08
PTPRD-204ENST00000397606 SERPINI1Q99574 410 aa8.34□□□□□ -1.08
PTPRD-204ENST00000397606 SLC7A5P2Q9GIP4 190 aa8.34□□□□□ -1.08
PTPRD-204ENST00000397606 EPN3Q9H201 632 aa8.34□□□□□ -1.08
PTPRD-204ENST00000397606 CXCL16Q9H2A7 254 aa8.34□□□□□ -1.08
PTPRD-204ENST00000397606 POLMQ9NP87 494 aaPredicted RBP8.34□□□□□ -1.08
PTPRD-204ENST00000397606 KCTD5Q9NXV2 234 aa8.34□□□□□ -1.08
PTPRD-204ENST00000397606 EPS15L1Q9UBC2 864 aa8.34□□□□□ -1.08
PTPRD-204ENST00000397606 NDRG2Q9UN36 371 aaKnown RBP8.34□□□□□ -1.08
PTPRD-204ENST00000397606 FAM237BA0A1B0GVD1 139 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 TCRBV9S1A1TA0A576 114 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 LINC01553A4QN01 128 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 SPECC1L-ADORA2AF8WAN1 911 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 CD3EAPO15446 510 aaKnown RBP8.33□□□□□ -1.08
PTPRD-204ENST00000397606 CLASP2O75122 1294 aaKnown RBP8.33□□□□□ -1.08
PTPRD-204ENST00000397606 RNASEH2AO75792 299 aaKnown RBP8.33□□□□□ -1.08
PTPRD-204ENST00000397606 FTH1P02794 183 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 TFE3P19532 575 aaPredicted RBP8.33□□□□□ -1.08
PTPRD-204ENST00000397606 KELP23276 732 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 MC4RP32245 332 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 SKIV2L2P42285 1042 aaKnown RBP8.33□□□□□ -1.08
PTPRD-204ENST00000397606 PRKAA2P54646 552 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 CAMK2GQ13555 558 aaPredicted RBP8.33□□□□□ -1.08
PTPRD-204ENST00000397606 FAM133BQ5BKY9 247 aaKnown RBP8.33□□□□□ -1.08
PTPRD-204ENST00000397606 RALGPS1Q5JS13 557 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 CERS6Q6ZMG9 384 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 GSTCDQ8NEC7 633 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 TRMT2BQ96GJ1 504 aaKnown RBP8.33□□□□□ -1.08
PTPRD-204ENST00000397606 SHDQ96IW2 340 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 SYNDIG1Q9H7V2 258 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 ARHGAP10A1A4S6 786 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 GRXCR1A8MXD5 290 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 GDF10P55107 478 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 SLC10A7Q0GE19 358 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 PTPRNQ16849 979 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 SPDYAQ5MJ70 313 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 STXBP5Q5T5C0 1151 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 PQLC3Q8N755 202 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 TSEN2Q8NCE0 465 aaKnown RBP8.33□□□□□ -1.08
PTPRD-204ENST00000397606 OR4K2Q8NGD2 314 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 PWWP2AQ96N64 755 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 SPHK2Q9NRA0 654 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 FBXO6Q9NRD1 293 aaPredicted RBP8.33□□□□□ -1.08
PTPRD-204ENST00000397606 FBXO10Q9UK96 956 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 ARL2BPQ9Y2Y0 163 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 STARD13Q9Y3M8 1113 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 LOXHD1Q8IVV2 1947 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 TRPC5OSA6NMA1 111 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 KDELR3O43731 214 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 CNTN5O94779 1100 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 ATXN8OSP0DMR3 200 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 LSP1P33241 339 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 ACVRL1P37023 503 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 BBS7Q8IWZ6 715 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 UMODL1-AS1Q8N2C9 162 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 OR2AP1Q8NGE2 309 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 MDM1Q8TC05 714 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 MAGEC3Q8TD91 643 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 ACMSDQ8TDX5 336 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 VCXQ9H320 206 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 EBF3Q9H4W6 596 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 NMRK1Q9NWW6 199 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 MARCOQ9UEW3 520 aaPredicted RBP8.33□□□□□ -1.08
PTPRD-204ENST00000397606 DYRK1BQ9Y463 629 aa8.33□□□□□ -1.08
PTPRD-204ENST00000397606 NCF1BA6NI72 391 aaPredicted RBP8.32□□□□□ -1.08
PTPRD-204ENST00000397606 NCF1CA8MVU1 366 aaPredicted RBP8.32□□□□□ -1.08
PTPRD-204ENST00000397606 BANF1O75531 89 aa8.32□□□□□ -1.08
PTPRD-204ENST00000397606 CATP04040 527 aaKnown RBP8.32□□□□□ -1.08
PTPRD-204ENST00000397606 SERPIND1P05546 499 aa8.32□□□□□ -1.08
PTPRD-204ENST00000397606 NCF1P14598 390 aaPredicted RBP8.32□□□□□ -1.08
PTPRD-204ENST00000397606 INSCQ1MX18 579 aa8.32□□□□□ -1.08
PTPRD-204ENST00000397606 RAB41Q5JT25 222 aa8.32□□□□□ -1.08
PTPRD-204ENST00000397606 N4BP2L1Q5TBK1 243 aaPredicted RBP8.32□□□□□ -1.08
PTPRD-204ENST00000397606 SCD5Q86SK9 330 aa8.32□□□□□ -1.08
PTPRD-204ENST00000397606 ZDHHC4Q9NPG8 344 aa8.32□□□□□ -1.08
PTPRD-204ENST00000397606 UTP6Q9NYH9 597 aaKnown RBP8.32□□□□□ -1.08
PTPRD-204ENST00000397606 PHTF1Q9UMS5 762 aa8.32□□□□□ -1.08
PTPRD-204ENST00000397606 ARHGAP26Q9UNA1 814 aa8.32□□□□□ -1.08
PTPRD-204ENST00000397606 TCAF1Q9Y4C2 921 aa8.32□□□□□ -1.08
PTPRD-204ENST00000397606 USP3Q9Y6I4 520 aa8.32□□□□□ -1.08
PTPRD-204ENST00000397606 DICER1Q9UPY3 1922 aaKnown RBP8.32□□□□□ -1.08
PTPRD-204ENST00000397606 EVPLQ92817 2033 aa8.32□□□□□ -1.08
PTPRD-204ENST00000397606 GLYATL1P3A0A0U1RQE8 302 aa8.32□□□□□ -1.08
PTPRD-204ENST00000397606 CACNB4O00305 520 aaPredicted RBP8.32□□□□□ -1.08
PTPRD-204ENST00000397606 ZBTB14O43829 449 aa8.32□□□□□ -1.08
PTPRD-204ENST00000397606 MAGEC1O60732 1142 aa8.32□□□□□ -1.08
PTPRD-204ENST00000397606 USP1O94782 785 aa8.32□□□□□ -1.08
PTPRD-204ENST00000397606 SLC25A14O95258 325 aaPredicted RBP8.32□□□□□ -1.08
PTPRD-204ENST00000397606 MYBL2P10244 700 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms