RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 PEX11AO75192 247 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 USP17L7P0C7H9 530 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 FGFR1P11362 822 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 IRF8Q02556 426 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 GNA13Q14344 377 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 HMBOX1Q6NT76 420 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 RASGEF1CQ8N431 466 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 TMEM161BQ8NDZ6 487 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 CCDC3Q9BQI4 270 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 MAN1C1Q9NR34 630 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 NUP50Q9UKX7 468 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 MEGF6O75095 1541 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 FAM47E-STBD1D6RA91 191 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 CYP7B1O75881 506 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 NFKB1P19838 968 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 TGFBR2P37173 567 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 PLCL1Q15111 1095 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 MYLPFQ96A32 169 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 Q96MT0 163 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 CCNB1IP1Q9NPC3 277 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 COL3A1P02461 1466 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 TECPR2O15040 1411 aa10.33□□□□□ -0.76
LIMCH1-203ENST00000396595 TCRBV9S1A1TA0A576 114 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 HOXB6P17509 224 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 ATF6P18850 670 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 MCCD1P59942 119 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 ZIK1Q3SY52 487 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 EIF3MQ7L2H7 374 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 PSMA8Q8TAA3 256 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 MAGEC3Q8TD91 643 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 TRAPPC12Q8WVT3 735 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 MKL1Q969V6 931 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 EPB41L1Q9H4G0 881 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 FBXO6Q9NRD1 293 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 FAM92AA1XBS5 289 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 ARHGEF33A8MVX0 844 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 UQCRBP14927 111 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 PTPN1P18031 435 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 S100A2P29034 98 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 GSTM5P46439 218 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 POLD2P49005 469 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 ZACNQ401N2 412 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 LACTB2Q53H82 288 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 SULT1C3Q6IMI6 304 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 ARHGAP36Q6ZRI8 547 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 PQLC1Q8N2U9 271 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 DNAJB14Q8TBM8 379 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 USP7Q93009 1102 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 COX4I2Q96KJ9 171 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 YME1L1Q96TA2 773 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 PRDM12Q9H4Q4 367 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 DDX4Q9NQI0 724 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 RAD18Q9NS91 495 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 CLN6Q9NWW5 311 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 NUDT5Q9UKK9 219 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 DMTF1Q9Y222 760 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 TNFSF13BQ9Y275 285 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 TBC1D30Q9Y2I9 924 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 PMF1-BGLAPU3KQ54 211 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 CCNKO75909 580 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 RECQL4O94761 1208 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 CLK2P49760 499 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 POLR2LP62875 67 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 DDI2Q5TDH0 399 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 DENND5AQ6IQ26 1287 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 OFCC1Q8IZS5 231 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 ZNF671Q8TAW3 534 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 ALG3Q92685 438 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 ZHX1-C8orf76Q96EF9 292 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 SENP8Q96LD8 212 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 CIDEBQ9UHD4 219 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 HGFP14210 728 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 NPR3P17342 541 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 PTSQ03393 145 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 SLC5A9Q2M3M2 681 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 IZUMO1Q8IYV9 350 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 LSM14AQ8ND56 463 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 UBE2E3Q969T4 207 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 FRMD6Q96NE9 622 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 RTKNQ9BST9 563 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 CDH19Q9H159 772 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 MARCH7Q9H992 704 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 PACSIN3Q9UKS6 424 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 PSMD13Q9UNM6 376 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 CORO2BQ9UQ03 480 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 DIP2BQ9P265 1576 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 CXCL11O14625 94 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 CELF2O95319 508 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 ITGA2P17301 1181 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 GTF2E2P29084 291 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 TGFB2P61812 414 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 SLC9A4Q6AI14 798 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 CCSAPQ6IQ19 270 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 PMF1Q6P1K2 205 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 ALYREFQ86V81 257 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 ADCY4Q8NFM4 1077 aa10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 MTG1Q9BT17 334 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-203ENST00000396595 TRMOQ9BU70 441 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms