RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 FAM13CQ8NE31 585 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 BHLHE22Q8NFJ8 381 aaPredicted RBP13.28□□□□□ -0.28
NPHP4-203ENST00000378169 DNAJB14Q8TBM8 379 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 MCOLN3Q8TDD5 553 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 NSMCE2Q96MF7 247 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 LBPP18428 481 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 CDH2P19022 906 aaPredicted RBP13.28□□□□□ -0.28
NPHP4-203ENST00000378169 HLA-DPA1P20036 260 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 EDNRBP24530 442 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 ARL13AQ5H913 290 aaPredicted RBP13.28□□□□□ -0.28
NPHP4-203ENST00000378169 SDE2Q6IQ49 451 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 CCDC81Q6ZN84 652 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 OTOP2Q7RTS6 562 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 C11orf74Q86VG3 221 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 TDRPQ86YL5 185 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 WDTC1Q8N5D0 677 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 DPF3Q92784 378 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 HMCESQ96FZ2 354 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 TEKT5Q96M29 485 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 RNF145Q96MT1 663 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 SLC9A7Q96T83 725 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 SLC39A8Q9C0K1 460 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 ZFP14Q9HCL3 533 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 CYLDQ9NQC7 956 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 MYO5AQ9Y4I1 1855 aaKnown RBP13.28□□□□□ -0.28
NPHP4-203ENST00000378169 MYH15Q9Y2K3 1946 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 PLIN3O60664 434 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 ACLYP53396 1101 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 BNIP1Q12981 228 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 TCEA2Q15560 299 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 CNSTQ6PJW8 725 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 C1orf50Q9BV19 199 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 ASAH2Q9NR71 780 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 SORCS3Q9UPU3 1222 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 PEX1O43933 1283 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 OR56A5P0C7T3 313 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 RHOQP17081 205 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 MC4RP32245 332 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 TTPAP49638 278 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 LIMK2P53671 638 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 PITX1P78337 314 aaPredicted RBP13.28□□□□□ -0.28
NPHP4-203ENST00000378169 DAB2P98082 770 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 GPR158Q5T848 1215 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 ZNF697Q5TEC3 545 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 NCBP2-AS2Q69YL0 99 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 DOK6Q6PKX4 331 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 TRAPPC5Q8IUR0 188 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 P3H2Q8IVL5 708 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 NKAPQ8N5F7 415 aaKnown RBP13.28□□□□□ -0.28
NPHP4-203ENST00000378169 BANPQ8N9N5 519 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 RBM15BQ8NDT2 890 aaKnown RBP13.28□□□□□ -0.28
NPHP4-203ENST00000378169 ZNF184Q99676 751 aaPredicted RBP13.28□□□□□ -0.28
NPHP4-203ENST00000378169 STRA6Q9BX79 667 aa13.28□□□□□ -0.28
NPHP4-203ENST00000378169 RGSL1A5PLK6 1076 aa13.27□□□□□ -0.28
NPHP4-203ENST00000378169 ULK2Q8IYT8 1036 aa13.27□□□□□ -0.28
NPHP4-203ENST00000378169 CENPLQ8N0S6 344 aaPredicted RBP13.27□□□□□ -0.28
NPHP4-203ENST00000378169 NAT16Q8N8M0 369 aa13.27□□□□□ -0.28
NPHP4-203ENST00000378169 PANX3Q96QZ0 392 aa13.27□□□□□ -0.28
NPHP4-203ENST00000378169 HERPUD2Q9BSE4 406 aa13.27□□□□□ -0.28
NPHP4-203ENST00000378169 FAM126AQ9BYI3 521 aaPredicted RBP13.27□□□□□ -0.28
NPHP4-203ENST00000378169 SPG21Q9NZD8 308 aa13.27□□□□□ -0.28
NPHP4-203ENST00000378169 PDP2Q9P2J9 529 aa13.27□□□□□ -0.28
NPHP4-203ENST00000378169 BLOC1S6Q9UL45 172 aa13.27□□□□□ -0.28
NPHP4-203ENST00000378169 STRCQ7RTU9 1775 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 UBR2Q8IWV8 1755 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 MARF1Q9Y4F3 1742 aaKnown RBP13.27□□□□□ -0.29
NPHP4-203ENST00000378169 TMEM114B3SHH9 223 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 CLPTM1O96005 669 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 TYMPP19971 482 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 TACR2P21452 398 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 PAX3P23760 479 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 CCNCP24863 283 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 FASP25445 335 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 VAC14Q08AM6 782 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 C15orf39Q6ZRI6 1047 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 MARK2Q7KZI7 788 aaKnown RBP13.27□□□□□ -0.29
NPHP4-203ENST00000378169 TMEM79Q9BSE2 394 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 BBS2Q9BXC9 721 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 NFKBIZQ9BYH8 718 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 MMADHCQ9H3L0 296 aaPredicted RBP13.27□□□□□ -0.29
NPHP4-203ENST00000378169 FAM124BQ9H5Z6 455 aaPredicted RBP13.27□□□□□ -0.29
NPHP4-203ENST00000378169 IGFLR1Q9H665 355 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 ZNF556Q9HAH1 456 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 CAPN10Q9HC96 672 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 CHCHD3Q9NX63 227 aaKnown RBP13.27□□□□□ -0.29
NPHP4-203ENST00000378169 CYTH4Q9UIA0 394 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 SUFUQ9UMX1 484 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 CITO14578 2027 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 C16orf96A6NNT2 1141 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 PDZK1P1A8MUH7 402 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 ALOX15P16050 662 aaPredicted RBP13.27□□□□□ -0.29
NPHP4-203ENST00000378169 POLR2EP19388 210 aaKnown RBP13.27□□□□□ -0.29
NPHP4-203ENST00000378169 GPC1P35052 558 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 GPX6P59796 221 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 SNRPD1P62314 119 aaKnown RBP13.27□□□□□ -0.29
NPHP4-203ENST00000378169 PURAQ00577 322 aaKnown RBP13.27□□□□□ -0.29
NPHP4-203ENST00000378169 INCA1Q0VD86 236 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 PEX6Q13608 980 aa13.27□□□□□ -0.29
NPHP4-203ENST00000378169 SAMD4BQ5PRF9 694 aaKnown RBP13.27□□□□□ -0.29
NPHP4-203ENST00000378169 USP45Q70EL2 814 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms